ADAMBAMOutputFormat

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

5. final def ==(arg0: Any): Boolean

   Definition Classes

   Any

6. def addHeader(samHeader: SAMFileHeader): Unit

   Attaches a header to the ADAMSAMOutputFormat Hadoop writer.

   Attaches a header to the ADAMSAMOutputFormat Hadoop writer. If a header has previously been attached, the header must be cleared first.

   samHeader

   Header to attach.

   Exceptions thrown

   Exception

   Exception thrown if a SAM header has previously been attached, and not cleared.

   See also

   clearHeader

7. final def asInstanceOf[T0]: T0

   Definition Classes

   Any

8. def clearHeader(): Unit

   Clears the attached header.

   Clears the attached header.

   See also

   addHeader

9. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

10. final def eq(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

11. def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

12. def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

13. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

14. def hashCode(): Int

    Definition Classes

    AnyRef → Any

15. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

16. final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

17. final def notify(): Unit

    Definition Classes

    AnyRef

18. final def notifyAll(): Unit

    Definition Classes

    AnyRef

19. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

20. def toString(): String

    Definition Classes

    AnyRef → Any

21. final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

22. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

23. final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )