Makes a SequenceDictionary from a SAMFileHeader.
Makes a SequenceDictionary from a SAMFileHeader.
htsjdk SAMFileHeader to extract sequences from.
A SequenceDictionary with populated sequence records.
Builds a sequence dictionary from an htsjdk SAMSequenceDictionary.
Builds a sequence dictionary from an htsjdk SAMSequenceDictionary.
Htsjdk sequence dictionary to build from.
A SequenceDictionary with populated sequence records.
Builds a sequence dictionary for a variable length collection of records.
Builds a sequence dictionary for a variable length collection of records.
Records to include in the dictionary.
A sequence dictionary containing these records.
Creates a new, empty SequenceDictionary.
Creates a sequence dictionary from a sequence of Avro Contigs.
Creates a sequence dictionary from a sequence of Avro Contigs.
Seq of Contig records.
Returns a sequence dictionary.
Converts a picard/samtools SAMSequenceDictionary into an ADAM sequence dictionary.
Converts a picard/samtools SAMSequenceDictionary into an ADAM sequence dictionary.
SAM style sequence dictionary.
Returns an ADAM style sequence dictionary.
fromVCFHeader
fromSAMHeader
Extracts a SAM sequence dictionary from a VCF header and returns an ADAM sequence dictionary.
Extracts a SAM sequence dictionary from a VCF header and returns an ADAM sequence dictionary.
VCF file header.
Returns an ADAM style sequence dictionary.
fromSAMHeader
Singleton object for creating SequenceDictionaries.