If true and saving as a legacy format, we will write shards so that they can be merged into a single file.
If true and saving as a legacy format, we will write shards so that they can be merged into a single file.
deferMerging
If true and asSingleFile is true, we will not merge the shards once we write them, and will leave them for the user to merge later.
If true and asSingleFile is true, we will not merge the shards once we write them, and will leave them for the user to merge later. If false and asSingleFile is true, then we will merge the shards on write. If asSingleFile is false, this is ignored.
asSingleFile
If true and saving as FASTQ, we will sort by read name.
Argument configuration for saving any output format.