org.bdgenomics.adam.rdd

GenomicRegionPartitioner

object GenomicRegionPartitioner extends Serializable

Helper object for creating GenomicRegionPartitioners.

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  6. def apply(numParts: Int, seqDict: SequenceDictionary): GenomicRegionPartitioner

    Creates a GenomicRegionPartitioner with a specific number of partitions.

    Creates a GenomicRegionPartitioner with a specific number of partitions.

    numParts

    The number of partitions to have in the new partitioner.

    seqDict

    A sequence dictionary describing the known genomic contigs.

    returns

    Returns a partitioner that divides the known genome into a set number of partitions.

  7. def apply(partitionSize: Long, seqDict: SequenceDictionary): GenomicRegionPartitioner

    Creates a GenomicRegionPartitioner where partitions cover a specific range of the genome.

    Creates a GenomicRegionPartitioner where partitions cover a specific range of the genome.

    partitionSize

    The number of bases in the reference genome that each partition should cover.

    seqDict

    A sequence dictionary describing the known genomic contigs.

    returns

    Returns a partitioner that divides the known genome into partitions of fixed size.

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