org.bdgenomics.adam.rdd

InFormatter

trait InFormatter[T, U <: GenomicRDD[T, U], V <: InFormatter[T, U, V]] extends Serializable

Formats data going into a pipe to an invoked process.

T

The type of records being formatted.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Known Subclasses
AnySAMInFormatter, BAMInFormatter, BEDInFormatter, FASTQInFormatter, GFF3InFormatter, GTFInFormatter, InterleavedFASTQInFormatter, NarrowPeakInFormatter, SAMInFormatter, Tab5InFormatter, Tab6InFormatter, VCFInFormatter
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Inherited
  1. InFormatter
  2. Serializable
  3. Serializable
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Abstract Value Members

  1. abstract val companion: InFormatterCompanion[T, U, V]

    Attributes
    protected

  2. abstract def write(os: OutputStream, iter: Iterator[T]): Unit

    Writes records from an iterator into an output stream.

    Writes records from an iterator into an output stream.

    os

    An OutputStream connected to a process we are piping to.

    iter

    An iterator of records to write.

Concrete Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  13. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  14. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  15. final def notify(): Unit

    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  18. def toString(): String

    Definition Classes
    AnyRef → Any

  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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