org.bdgenomics.adam.rdd

InnerTreeRegionJoin

case class InnerTreeRegionJoin[T, U]()(implicit evidence$1: ClassTag[T], evidence$2: ClassTag[U]) extends RegionJoin[T, U, T, U] with TreeRegionJoin[T, U, T, U] with Product with Serializable

Implements an inner region join where the left side of the join is broadcast.

Linear Supertypes
Product, Equals, TreeRegionJoin[T, U, T, U], RegionJoin[T, U, T, U], Serializable, Serializable, AnyRef, Any
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Inherited
  1. InnerTreeRegionJoin
  2. Product
  3. Equals
  4. TreeRegionJoin
  5. RegionJoin
  6. Serializable
  7. Serializable
  8. AnyRef
  9. Any
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  1. Public
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Instance Constructors

  1. new InnerTreeRegionJoin()(implicit arg0: ClassTag[T], arg1: ClassTag[U])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def broadcastAndJoin(tree: IntervalArray[ReferenceRegion, T], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(T, U)]

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  13. def join(broadcastTree: Broadcast[IntervalArray[ReferenceRegion, T]], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(T, U)]

  14. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  15. final def notify(): Unit

    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  17. def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(T, U)]

    Performs an inner region join between two RDDs.

    Performs an inner region join between two RDDs.

    baseRDD

    The 'left' side of the join

    joinedRDD

    The 'right' side of the join

    returns

    An RDD of pairs (x, y), where x is from baseRDD, y is from joinedRDD, and the region corresponding to x overlaps the region corresponding to y.

    Definition Classes
    InnerTreeRegionJoin → RegionJoin

  18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from TreeRegionJoin[T, U, T, U]

Inherited from RegionJoin[T, U, T, U]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped