org.bdgenomics.adam.rdd

InnerTreeRegionJoinAndGroupByRight

case class InnerTreeRegionJoinAndGroupByRight[T, U]()(implicit evidence$5: ClassTag[T], evidence$6: ClassTag[U]) extends RegionJoin[T, U, Iterable[T], U] with TreeRegionJoin[T, U, Iterable[T], U] with Product with Serializable

Performs an inner region join, followed logically by grouping by the right value. This is implemented without any shuffling; the join naturally returns values on the left grouped by the right value.

Linear Supertypes
Product, Equals, TreeRegionJoin[T, U, Iterable[T], U], RegionJoin[T, U, Iterable[T], U], Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. InnerTreeRegionJoinAndGroupByRight
  2. Product
  3. Equals
  4. TreeRegionJoin
  5. RegionJoin
  6. Serializable
  7. Serializable
  8. AnyRef
  9. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new InnerTreeRegionJoinAndGroupByRight()(implicit arg0: ClassTag[T], arg1: ClassTag[U])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def broadcastAndJoin(tree: IntervalArray[ReferenceRegion, T], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  13. def join(broadcastTree: Broadcast[IntervalArray[ReferenceRegion, T]], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

  14. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  15. final def notify(): Unit

    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  17. def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    baseRDD

    The 'left' side of the join

    joinedRDD

    The 'right' side of the join

    returns

    An RDD of pairs (Iterable[x], y), where the Iterable[x] is from baseRDD, y is from joinedRDD, and all values in the Iterable[x] are aligned at regions that overlap the region corresponding to y. If the iterable is empty, the key-value pair is filtered out.

    Definition Classes
    InnerTreeRegionJoinAndGroupByRight → RegionJoin

  18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from TreeRegionJoin[T, U, Iterable[T], U]

Inherited from RegionJoin[T, U, Iterable[T], U]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped