org.bdgenomics.adam.rdd

ReferencePartitioner

case class ReferencePartitioner(sd: SequenceDictionary) extends Partitioner with Product with Serializable

Repartitions objects that are keyed by a ReferencePosition or ReferenceRegion into a single partition per contig.

Linear Supertypes
Product, Equals, Partitioner, Serializable, Serializable, AnyRef, Any
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Inherited
  1. ReferencePartitioner
  2. Product
  3. Equals
  4. Partitioner
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Visibility
  1. Public
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Instance Constructors

  1. new ReferencePartitioner(sd: SequenceDictionary)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  11. def getPartition(key: Any): Int

    Definition Classes
    ReferencePartitioner → Partitioner

  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  13. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  14. final def notify(): Unit

    Definition Classes
    AnyRef

  15. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  16. def numPartitions: Int

    Definition Classes
    ReferencePartitioner → Partitioner

  17. val sd: SequenceDictionary

  18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from Partitioner

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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