VariantRDD

Value Members

1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. def apply(ds: Dataset[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine]): VariantRDD

   An dataset containing variants called against a given reference genome.

   An dataset containing variants called against a given reference genome.

   ds

   Variants.

   sequences

   A dictionary describing the reference genome.

   headerLines

   The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of Variants.

7. def apply(rdd: RDD[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantRDD

   Builds a VariantRDD without a partition map.

   Builds a VariantRDD without a partition map.

   rdd

   The underlying Variant RDD.

   sequences

   The sequence dictionary for the RDD.

   headerLines

   The header lines for the RDD.

   returns

   A new Variant RDD.

8. final def asInstanceOf[T0]: T0

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9. def clone(): AnyRef

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10. final def eq(arg0: AnyRef): Boolean

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11. def equals(arg0: Any): Boolean

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12. def finalize(): Unit

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13. final def getClass(): Class[_]

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14. def hashCode(): Int

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15. final def isInstanceOf[T0]: Boolean

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16. final def ne(arg0: AnyRef): Boolean

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17. final def notify(): Unit

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18. final def notifyAll(): Unit

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19. final def synchronized[T0](arg0: ⇒ T0): T0

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20. def toString(): String

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21. final def wait(): Unit

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22. final def wait(arg0: Long, arg1: Int): Unit

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23. final def wait(arg0: Long): Unit

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