org.bdgenomics.adam.sql

TranscriptEffect

class TranscriptEffect extends Product

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  2. Product
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Instance Constructors

  1. new TranscriptEffect(alternateAllele: Option[String], effects: Seq[String], geneName: Option[String], geneId: Option[String], featureType: Option[String], featureId: Option[String], biotype: Option[String], rank: Option[Int], total: Option[Int], genomicHgvs: Option[String], transcriptHgvs: Option[String], proteinHgvs: Option[String], cdnaPosition: Option[Int], cdnaLength: Option[Int], cdsPosition: Option[Int], cdsLength: Option[Int], proteinPosition: Option[Int], proteinLength: Option[Int], distance: Option[Int], messages: Seq[String])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. val alternateAllele: Option[String]

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  8. val biotype: Option[String]

  9. def canEqual(that: Any): Boolean

    Definition Classes
    TranscriptEffect → Equals

  10. val cdnaLength: Option[Int]

  11. val cdnaPosition: Option[Int]

  12. val cdsLength: Option[Int]

  13. val cdsPosition: Option[Int]

  14. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  15. val distance: Option[Int]

  16. val effects: Seq[String]

  17. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  19. val featureId: Option[String]

  20. val featureType: Option[String]

  21. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  22. val geneId: Option[String]

  23. val geneName: Option[String]

  24. val genomicHgvs: Option[String]

  25. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  26. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  27. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  28. val messages: Seq[String]

  29. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  30. final def notify(): Unit

    Definition Classes
    AnyRef

  31. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  32. def productArity: Int

    Definition Classes
    TranscriptEffect → Product

  33. def productElement(i: Int): Any

    Definition Classes
    TranscriptEffect → Product

  34. def productIterator: Iterator[Any]

    Definition Classes
    Product

  35. def productPrefix: String

    Definition Classes
    Product

  36. val proteinHgvs: Option[String]

  37. val proteinLength: Option[Int]

  38. val proteinPosition: Option[Int]

  39. val rank: Option[Int]

  40. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  41. def toAvro: formats.avro.TranscriptEffect

  42. def toString(): String

    Definition Classes
    AnyRef → Any

  43. val total: Option[Int]

  44. val transcriptHgvs: Option[String]

  45. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  46. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  47. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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