org.bdgenomics.adam.sql

VariantCallingAnnotations

class VariantCallingAnnotations extends Product

Linear Supertypes
Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. VariantCallingAnnotations
  2. Product
  3. Equals
  4. AnyRef
  5. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new VariantCallingAnnotations(filtersApplied: Option[Boolean], filtersPassed: Option[Boolean], filtersFailed: Seq[String], downsampled: Option[Boolean], baseQRankSum: Option[Float], fisherStrandBiasPValue: Option[Float], rmsMapQ: Option[Float], mapq0Reads: Option[Int], mqRankSum: Option[Float], readPositionRankSum: Option[Float], genotypePriors: Seq[Float], genotypePosteriors: Seq[Float], vqslod: Option[Float], culprit: Option[String], attributes: Map[String, String])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. val attributes: Map[String, String]

  8. val baseQRankSum: Option[Float]

  9. def canEqual(that: Any): Boolean

    Definition Classes
    VariantCallingAnnotations → Equals

  10. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  11. val culprit: Option[String]

  12. val downsampled: Option[Boolean]

  13. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  14. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  15. val filtersApplied: Option[Boolean]

  16. val filtersFailed: Seq[String]

  17. val filtersPassed: Option[Boolean]

  18. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  19. val fisherStrandBiasPValue: Option[Float]

  20. val genotypePosteriors: Seq[Float]

  21. val genotypePriors: Seq[Float]

  22. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  23. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  24. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  25. val mapq0Reads: Option[Int]

  26. val mqRankSum: Option[Float]

  27. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  28. final def notify(): Unit

    Definition Classes
    AnyRef

  29. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  30. def productArity: Int

    Definition Classes
    VariantCallingAnnotations → Product

  31. def productElement(i: Int): Any

    Definition Classes
    VariantCallingAnnotations → Product

  32. def productIterator: Iterator[Any]

    Definition Classes
    Product

  33. def productPrefix: String

    Definition Classes
    Product

  34. val readPositionRankSum: Option[Float]

  35. val rmsMapQ: Option[Float]

  36. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  37. def toAvro: formats.avro.VariantCallingAnnotations

  38. def toString(): String

    Definition Classes
    AnyRef → Any

  39. val vqslod: Option[Float]

  40. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  41. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  42. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped