org.bdgenomics.adam.converters

VariantAnnotationConverter

object VariantAnnotationConverter extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. VariantAnnotationConverter
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. val CLINVAR_KEYS: List[AttrKey]

  5. val COSMIC_KEYS: List[AttrKey]

  6. val DBNSFP_KEYS: List[AttrKey]

  7. val FORMAT_KEYS: Seq[AttrKey]

  8. val INFO_KEYS: Seq[AttrKey]

  9. val OMIM_KEYS: List[AttrKey]

  10. lazy val VCF2DatabaseAnnotations: Map[String, (Int, (AnyRef) ⇒ AnyRef)]

  11. lazy val VCF2GenotypeAnnotations: Map[String, (Int, (AnyRef) ⇒ AnyRef)]

  12. lazy val VCF2VariantCallingAnnotations: Map[String, (Int, (AnyRef) ⇒ AnyRef)]

  13. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  14. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  15. def convert(g: Genotype, genotype: Genotype): Genotype

  16. def convert(vc: VariantContext, call: VariantCallingAnnotations): VariantCallingAnnotations

  17. def convert(vc: VariantContext, annotation: DatabaseVariantAnnotation): DatabaseVariantAnnotation

  18. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  19. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  20. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  21. lazy val formatHeaderLines: Seq[VCFCompoundHeaderLine]

  22. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  23. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  24. lazy val infoHeaderLines: Seq[VCFCompoundHeaderLine]

  25. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  26. def mergeAnnotations(leftRecord: DatabaseVariantAnnotation, rightRecord: DatabaseVariantAnnotation): DatabaseVariantAnnotation

  27. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  28. final def notify(): Unit

    Definition Classes
    AnyRef

  29. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  30. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  31. def toString(): String

    Definition Classes
    AnyRef → Any

  32. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  33. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped