Convert an ADAMVariantContext into the equivalent GATK VariantContext
Convert an ADAMVariantContext into the equivalent GATK VariantContext
GATK VariantContext
Converts a single GATK variant into ADAMVariantContext(s).
Converts a single GATK variant into ADAMVariantContext(s).
GATK Variant context to convert.
ADAM variant contexts
This class converts VCF data to and from ADAM. This translation occurs at the abstraction level of the GATK VariantContext which represents VCF data, and at the ADAMVariantContext level, which aggregates ADAM variant/genotype/annotation data together.
If an annotation has a corresponding set of fields in the VCF standard, a conversion to/from the GATK VariantContext should be implemented in this class.