org.bdgenomics.adam.models

RecordGroup

class RecordGroup extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. RecordGroup
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new RecordGroup(sample: String, recordGroupName: String, sequencingCenter: Option[String] = None, description: Option[String] = None, runDateEpoch: Option[Long] = None, flowOrder: Option[String] = None, keySequence: Option[String] = None, library: Option[String] = None, predictedMedianInsertSize: Option[Int] = None, platform: Option[String] = None, platformUnit: Option[String] = None)

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. val description: Option[String]

  7. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  8. def equals(o: Any): Boolean

    Compares equality to another object.

    Compares equality to another object. Only checks equality via the sample and recordGroupName fields.

    o

    Object to compare against.

    returns

    Returns true if the object is a RecordGroup, and the sample and group name are equal. Else, returns false.

    Definition Classes
    RecordGroup → AnyRef → Any

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. val flowOrder: Option[String]

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. def hashCode(): Int

    Generates a hash from the sample and record group name fields.

    Generates a hash from the sample and record group name fields.

    returns

    Hash code for this object.

    Definition Classes
    RecordGroup → AnyRef → Any

  13. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  14. val keySequence: Option[String]

  15. val library: Option[String]

  16. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  17. final def notify(): Unit

    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  19. val platform: Option[String]

  20. val platformUnit: Option[String]

  21. val predictedMedianInsertSize: Option[Int]

  22. val recordGroupName: String

  23. val runDateEpoch: Option[Long]

  24. val sample: String

  25. val sequencingCenter: Option[String]

  26. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  27. def toSAMReadGroupRecord(): SAMReadGroupRecord

    Converts a record group into a SAM formatted record group.

    Converts a record group into a SAM formatted record group.

    returns

    A SAM formatted record group.

  28. def toString(): String

    Definition Classes
    AnyRef → Any

  29. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  30. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped