Object

org.bdgenomics.adam.models

OptionalRegionOrdering

Related Doc: package models

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object OptionalRegionOrdering extends OptionalReferenceOrdering[ReferenceRegion]

A sort order that orders all given regions lexicographically by contig and numerically within a single contig, and puts all non-provided regions at the end. An extension of PositionOrdering to Optional data.

See also

PositionOrdering

Linear Supertypes
OptionalReferenceOrdering[ReferenceRegion], Ordering[Option[ReferenceRegion]], PartialOrdering[Option[ReferenceRegion]], Equiv[Option[ReferenceRegion]], Serializable, Serializable, Comparator[Option[ReferenceRegion]], AnyRef, Any
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Inherited
  1. OptionalRegionOrdering
  2. OptionalReferenceOrdering
  3. Ordering
  4. PartialOrdering
  5. Equiv
  6. Serializable
  7. Serializable
  8. Comparator
  9. AnyRef
  10. Any
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Visibility
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Type Members

  1. class Ops extends AnyRef

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    Definition Classes
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Value Members

  1. final def !=(arg0: Any): Boolean

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    AnyRef → Any

  2. final def ##(): Int

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    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Any

  5. val baseOrdering: RegionOrdering.type

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    Definition Classes
    OptionalRegionOrdering → OptionalReferenceOrdering

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. def compare(a: Option[ReferenceRegion], b: Option[ReferenceRegion]): Int

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    Definition Classes
    OptionalReferenceOrdering → Ordering → Comparator

  8. final def eq(arg0: AnyRef): Boolean

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    AnyRef

  9. def equals(arg0: Any): Boolean

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    AnyRef → Any

  10. def equiv(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

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    Definition Classes
    Ordering → PartialOrdering → Equiv

  11. def finalize(): Unit

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    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  13. def gt(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

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    Definition Classes
    Ordering → PartialOrdering

  14. def gteq(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

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    Definition Classes
    Ordering → PartialOrdering

  15. def hashCode(): Int

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    AnyRef → Any

  16. final def isInstanceOf[T0]: Boolean

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    Any

  17. def lt(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

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    Ordering → PartialOrdering

  18. def lteq(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

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    Ordering → PartialOrdering

  19. def max(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Option[ReferenceRegion]

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    Ordering

  20. def min(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Option[ReferenceRegion]

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    Ordering

  21. implicit def mkOrderingOps(lhs: Option[ReferenceRegion]): Ops

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  22. final def ne(arg0: AnyRef): Boolean

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  23. final def notify(): Unit

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    AnyRef

  24. final def notifyAll(): Unit

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  25. def on[U](f: (U) ⇒ Option[ReferenceRegion]): Ordering[U]

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    Ordering

  26. def reverse: Ordering[Option[ReferenceRegion]]

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    Ordering → PartialOrdering

  27. def reversed(): Comparator[Option[ReferenceRegion]]

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    Definition Classes
    Comparator

  28. final def synchronized[T0](arg0: ⇒ T0): T0

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    AnyRef

  29. def thenComparing[U <: Comparable[_ >: U]](arg0: Function[_ >: Option[ReferenceRegion], _ <: U]): Comparator[Option[ReferenceRegion]]

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    Definition Classes
    Comparator

  30. def thenComparing[U](arg0: Function[_ >: Option[ReferenceRegion], _ <: U], arg1: Comparator[_ >: U]): Comparator[Option[ReferenceRegion]]

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    Definition Classes
    Comparator

  31. def thenComparing(arg0: Comparator[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

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    Definition Classes
    Comparator

  32. def thenComparingDouble(arg0: ToDoubleFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

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    Definition Classes
    Comparator

  33. def thenComparingInt(arg0: ToIntFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

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    Definition Classes
    Comparator

  34. def thenComparingLong(arg0: ToLongFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

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    Definition Classes
    Comparator

  35. def toString(): String

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    AnyRef → Any

  36. def tryCompare(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Some[Int]

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    Ordering → PartialOrdering

  37. final def wait(): Unit

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    @throws( ... )

  38. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  39. final def wait(arg0: Long): Unit

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    Annotations
    @throws( ... )

Inherited from OptionalReferenceOrdering[ReferenceRegion]

Inherited from Ordering[Option[ReferenceRegion]]

Inherited from PartialOrdering[Option[ReferenceRegion]]

Inherited from Equiv[Option[ReferenceRegion]]

Inherited from Serializable

Inherited from Serializable

Inherited from Comparator[Option[ReferenceRegion]]

Inherited from AnyRef

Inherited from Any

Ungrouped