AnySAMInFormatter

abstract val companion: InFormatterCompanion[AlignmentRecord, AlignmentRecordRDD, T]

abstract val converter: AlignmentRecordConverter

A converter from AlignmentRecord to SAMRecord.

abstract val header: SAMFileHeaderWritable

A serializable form of the SAM File Header.

abstract def makeWriter(os: OutputStream): SAMFileWriter

abstract val recordGroups: RecordGroupDictionary

A dictionary describing the read groups these reads are from.

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

final def asInstanceOf[T0]: T0

def clone(): AnyRef

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

final def getClass(): Class[_]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

def write(os: OutputStream, iter: Iterator[AlignmentRecord]): Unit

Writes alignment records to an output stream in SAM format.