Object/Class

org.bdgenomics.adam.rdd.read

BAMInFormatter

Related Docs: class BAMInFormatter | package read

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object BAMInFormatter extends AnySAMInFormatterCompanion[BAMInFormatter] with Serializable

InFormatter companion for building an InFormatter that streams BAM.

Linear Supertypes
Serializable, Serializable, AnySAMInFormatterCompanion[BAMInFormatter], InFormatterCompanion[AlignmentRecord, AlignmentRecordRDD, BAMInFormatter], AnyRef, Any
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Inherited
  1. BAMInFormatter
  2. Serializable
  3. Serializable
  4. AnySAMInFormatterCompanion
  5. InFormatterCompanion
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def apply(gRdd: AlignmentRecordRDD): BAMInFormatter

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    Makes an AnySAMInFormatter from a GenomicRDD of AlignmentRecords.

    Makes an AnySAMInFormatter from a GenomicRDD of AlignmentRecords.

    gRdd

    AlignmentRecordRDD with reference build and record group info.

    returns

    Returns an InFormatter that extends AnySAMInFormatter.

    Definition Classes
    AnySAMInFormatterCompanion → InFormatterCompanion

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  11. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  13. def makeFormatter(header: SAMFileHeaderWritable, recordGroups: RecordGroupDictionary, converter: AlignmentRecordConverter): BAMInFormatter

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    Attributes
    protected
    Definition Classes
    BAMInFormatter → AnySAMInFormatterCompanion

  14. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  15. final def notify(): Unit

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    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  17. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  18. def toString(): String

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    Definition Classes
    AnyRef → Any

  19. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnySAMInFormatterCompanion[BAMInFormatter]

Inherited from InFormatterCompanion[AlignmentRecord, AlignmentRecordRDD, BAMInFormatter]

Inherited from AnyRef

Inherited from Any

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