Class

org.bdgenomics.adam.rdd.read

InstrumentedADAMCRAMOutputFormatHeaderLess

Related Doc: package read

Permalink

class InstrumentedADAMCRAMOutputFormatHeaderLess[K] extends InstrumentedOutputFormat[K, SAMRecordWritable]

Wrapper that adds instrumentation to the CRAM output format.

K

The key type. Keys are not written.

Linear Supertypes
InstrumentedOutputFormat[K, SAMRecordWritable], OutputFormat[K, SAMRecordWritable], AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. InstrumentedADAMCRAMOutputFormatHeaderLess
  2. InstrumentedOutputFormat
  3. OutputFormat
  4. AnyRef
  5. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new InstrumentedADAMCRAMOutputFormatHeaderLess()

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  5. def checkOutputSpecs(context: JobContext): Unit

    Permalink
    Definition Classes
    InstrumentedOutputFormat → OutputFormat

  6. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. val delegate: OutputFormat[K, SAMRecordWritable]

    Permalink
    Definition Classes
    InstrumentedOutputFormat

  8. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  9. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  10. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  12. def getOutputCommitter(context: TaskAttemptContext): OutputCommitter

    Permalink
    Definition Classes
    InstrumentedOutputFormat → OutputFormat

  13. def getRecordWriter(context: TaskAttemptContext): RecordWriter[K, SAMRecordWritable]

    Permalink
    Definition Classes
    InstrumentedOutputFormat → OutputFormat

  14. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  15. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  16. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  17. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  19. def outputFormatClass(): Class[_ <: OutputFormat[K, SAMRecordWritable]]

    Permalink
    Definition Classes
    InstrumentedADAMCRAMOutputFormatHeaderLess → InstrumentedOutputFormat

  20. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  21. def timerName(): String

    Permalink
    Definition Classes
    InstrumentedADAMCRAMOutputFormatHeaderLess → InstrumentedOutputFormat

  22. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any

  23. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  24. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from InstrumentedOutputFormat[K, SAMRecordWritable]

Inherited from OutputFormat[K, SAMRecordWritable]

Inherited from AnyRef

Inherited from Any

Ungrouped