Class/Object

org.bdgenomics.adam.rdd.read

QualityScoreBin

Related Docs: object QualityScoreBin | package read

Permalink

case class QualityScoreBin(low: Int, high: Int, score: Int) extends Product with Serializable

A bin to put quality scores in.

low

The lowest quality score in the bin.

high

The highest quality score in the bin.

score

The score to assign to all these bases.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. QualityScoreBin
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new QualityScoreBin(low: Int, high: Int, score: Int)

    Permalink

    low

    The lowest quality score in the bin.

    high

    The highest quality score in the bin.

    score

    The score to assign to all these bases.

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  5. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  7. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  8. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  9. val high: Int

    Permalink

    The highest quality score in the bin.

  10. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  11. val low: Int

    Permalink

    The lowest quality score in the bin.

  12. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  13. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  15. val score: Int

    Permalink

    The score to assign to all these bases.

  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  17. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped