Class/Object

org.bdgenomics.adam.sql

Feature

Related Docs: object Feature | package sql

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class Feature extends Product

Linear Supertypes
Product, Equals, AnyRef, Any
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Inherited
  1. Feature
  2. Product
  3. Equals
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Feature(featureId: Option[String], name: Option[String], source: Option[String], featureType: Option[String], contigName: Option[String], start: Option[Long], end: Option[Long], strand: Option[String], phase: Option[Int], frame: Option[Int], score: Option[Double], geneId: Option[String], transcriptId: Option[String], exonId: Option[String], aliases: Seq[String], parentIds: Seq[String], target: Option[String], gap: Option[String], derivesFrom: Option[String], notes: Seq[String], dbxrefs: Seq[Dbxref], ontologyTerms: Seq[OntologyTerm], circular: Option[Boolean], attributes: Map[String, String])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. val aliases: Seq[String]

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  6. val attributes: Map[String, String]

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  7. def canEqual(that: Any): Boolean

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    Definition Classes
    Feature → Equals
  8. val circular: Option[Boolean]

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  9. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  10. val contigName: Option[String]

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  11. val dbxrefs: Seq[Dbxref]

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  12. val derivesFrom: Option[String]

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  13. val end: Option[Long]

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  14. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  15. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  16. val exonId: Option[String]

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  17. val featureId: Option[String]

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  18. val featureType: Option[String]

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  19. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  20. val frame: Option[Int]

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  21. val gap: Option[String]

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  22. val geneId: Option[String]

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  23. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  24. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  25. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  26. val name: Option[String]

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  27. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  28. val notes: Seq[String]

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  29. final def notify(): Unit

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    Definition Classes
    AnyRef
  30. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  31. val ontologyTerms: Seq[OntologyTerm]

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  32. val parentIds: Seq[String]

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  33. val phase: Option[Int]

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  34. def productArity: Int

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    Definition Classes
    Feature → Product
  35. def productElement(i: Int): Any

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    Definition Classes
    Feature → Product
  36. def productIterator: Iterator[Any]

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    Definition Classes
    Product
  37. def productPrefix: String

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    Definition Classes
    Product
  38. val score: Option[Double]

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  39. val source: Option[String]

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  40. val start: Option[Long]

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  41. val strand: Option[String]

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  42. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  43. val target: Option[String]

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  44. def toAvro: formats.avro.Feature

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  45. def toString(): String

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    Definition Classes
    AnyRef → Any
  46. val transcriptId: Option[String]

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  47. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  48. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  49. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped