Class/Object

org.bdgenomics.adam.sql

TranscriptEffect

Related Docs: object TranscriptEffect | package sql

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class TranscriptEffect extends Product

Linear Supertypes
Product, Equals, AnyRef, Any
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Inherited
  1. TranscriptEffect
  2. Product
  3. Equals
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new TranscriptEffect(alternateAllele: Option[String], effects: Seq[String], geneName: Option[String], geneId: Option[String], featureType: Option[String], featureId: Option[String], biotype: Option[String], rank: Option[Int], total: Option[Int], genomicHgvs: Option[String], transcriptHgvs: Option[String], proteinHgvs: Option[String], cdnaPosition: Option[Int], cdnaLength: Option[Int], cdsPosition: Option[Int], cdsLength: Option[Int], proteinPosition: Option[Int], proteinLength: Option[Int], distance: Option[Int], messages: Seq[String])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. val alternateAllele: Option[String]

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  6. val biotype: Option[String]

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  7. def canEqual(that: Any): Boolean

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    Definition Classes
    TranscriptEffect → Equals
  8. val cdnaLength: Option[Int]

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  9. val cdnaPosition: Option[Int]

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  10. val cdsLength: Option[Int]

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  11. val cdsPosition: Option[Int]

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  12. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  13. val distance: Option[Int]

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  14. val effects: Seq[String]

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  15. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  16. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  17. val featureId: Option[String]

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  18. val featureType: Option[String]

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  19. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  20. val geneId: Option[String]

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  21. val geneName: Option[String]

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  22. val genomicHgvs: Option[String]

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  23. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  24. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  25. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  26. val messages: Seq[String]

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  27. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  28. final def notify(): Unit

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    Definition Classes
    AnyRef
  29. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  30. def productArity: Int

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    Definition Classes
    TranscriptEffect → Product
  31. def productElement(i: Int): Any

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    Definition Classes
    TranscriptEffect → Product
  32. def productIterator: Iterator[Any]

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    Definition Classes
    Product
  33. def productPrefix: String

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    Definition Classes
    Product
  34. val proteinHgvs: Option[String]

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  35. val proteinLength: Option[Int]

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  36. val proteinPosition: Option[Int]

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  37. val rank: Option[Int]

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  38. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  39. def toAvro: formats.avro.TranscriptEffect

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  40. def toString(): String

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    Definition Classes
    AnyRef → Any
  41. val total: Option[Int]

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  42. val transcriptHgvs: Option[String]

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  43. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  44. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  45. final def wait(arg0: Long): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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