Class/Object

org.bdgenomics.adam.sql

VariantCallingAnnotations

Related Docs: object VariantCallingAnnotations | package sql

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class VariantCallingAnnotations extends Product

Linear Supertypes
Product, Equals, AnyRef, Any
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Inherited
  1. VariantCallingAnnotations
  2. Product
  3. Equals
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new VariantCallingAnnotations(filtersApplied: Option[Boolean], filtersPassed: Option[Boolean], filtersFailed: Seq[String], downsampled: Option[Boolean], baseQRankSum: Option[Float], fisherStrandBiasPValue: Option[Float], rmsMapQ: Option[Float], mapq0Reads: Option[Int], mqRankSum: Option[Float], readPositionRankSum: Option[Float], genotypePriors: Seq[Float], genotypePosteriors: Seq[Float], vqslod: Option[Float], culprit: Option[String], attributes: Map[String, String])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  5. val attributes: Map[String, String]

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  6. val baseQRankSum: Option[Float]

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  7. def canEqual(that: Any): Boolean

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    Definition Classes
    VariantCallingAnnotations → Equals
  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  9. val culprit: Option[String]

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  10. val downsampled: Option[Boolean]

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  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  12. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  13. val filtersApplied: Option[Boolean]

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  14. val filtersFailed: Seq[String]

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  15. val filtersPassed: Option[Boolean]

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  16. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  17. val fisherStrandBiasPValue: Option[Float]

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  18. val genotypePosteriors: Seq[Float]

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  19. val genotypePriors: Seq[Float]

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  20. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  21. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  22. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  23. val mapq0Reads: Option[Int]

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  24. val mqRankSum: Option[Float]

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  25. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  26. final def notify(): Unit

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    Definition Classes
    AnyRef
  27. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  28. def productArity: Int

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    Definition Classes
    VariantCallingAnnotations → Product
  29. def productElement(i: Int): Any

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    Definition Classes
    VariantCallingAnnotations → Product
  30. def productIterator: Iterator[Any]

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    Definition Classes
    Product
  31. def productPrefix: String

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    Definition Classes
    Product
  32. val readPositionRankSum: Option[Float]

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  33. val rmsMapQ: Option[Float]

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  34. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  35. def toAvro: formats.avro.VariantCallingAnnotations

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  36. def toString(): String

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    Definition Classes
    AnyRef → Any
  37. val vqslod: Option[Float]

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  38. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  40. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped