case classIndexedFastaFile(sc: SparkContext, filePath: String, stringency: ValidationStringency = ValidationStringency.STRICT) extends ReferenceFile with Logging with Product with Serializable
Loads and extracts sequences directly from indexed fasta or fa files. filePath requires fai index in the
same directory with same naming convention.
filePath
path to fasta or fa index
Linear Supertypes
Product, Equals, Logging, ReferenceFile, Serializable, Serializable, AnyRef, Any
Loads and extracts sequences directly from indexed fasta or fa files. filePath requires fai index in the same directory with same naming convention.
path to fasta or fa index