org.bdgenomics.utils.cli

BDGSparkCommand

trait BDGSparkCommand[A <: Args4jBase] extends BDGCommand with Logging

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Logging, BDGCommand, Runnable, AnyRef, Any
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Inherited
  1. BDGSparkCommand
  2. Logging
  3. BDGCommand
  4. Runnable
  5. AnyRef
  6. Any
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Abstract Value Members

  1. abstract val args: A

    Attributes
    protected

  2. abstract val companion: BDGCommandCompanion

    Definition Classes
    BDGCommand

  3. abstract def run(sc: SparkContext): Unit

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  7. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  8. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  10. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  11. def initializeMetrics(sc: SparkContext): Option[MetricsListener]

  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  13. def isTraceEnabled(): Boolean

    Attributes
    protected
    Definition Classes
    Logging

  14. def log: Logger

    Attributes
    protected
    Definition Classes
    Logging

  15. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  16. def logDebug(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  17. def logError(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  18. def logError(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  19. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  20. def logInfo(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  21. def logName: String

    Attributes
    protected
    Definition Classes
    Logging

  22. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  23. def logTrace(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  24. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging

  25. def logWarning(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging

  26. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  27. final def notify(): Unit

    Definition Classes
    AnyRef

  28. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  29. def printMetrics(totalTime: Long, metricsListener: Option[MetricsListener]): Unit

  30. def run(): Unit

    Definition Classes
    BDGSparkCommand → Runnable

  31. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  32. def toString(): String

    Definition Classes
    AnyRef → Any

  33. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  35. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Logging

Inherited from BDGCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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