org.bdgenomics.utils.intervalrdd

IntervalPartition

class IntervalPartition[K <: Interval[K], V] extends Serializable with Logging

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protected
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Logging, Serializable, Serializable, AnyRef, Any
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Instance Constructors

  1. new IntervalPartition(array: IntervalArray[K, V])(implicit arg0: ClassTag[V])

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. val array: IntervalArray[K, V]

    Attributes
    protected
  5. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  9. def filter(pred: ((K, V)) ⇒ Boolean): IntervalPartition[K, V]

    Return a new IntervalPartition filtered by some predicate

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. def get(): Iterable[(K, V)]

    Gets all (k,v) data from partition

    Gets all (k,v) data from partition

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  12. def get(r: K): Iterable[(K, V)]

    Gets all (k,v) data from partition within the specificed interval

    Gets all (k,v) data from partition within the specificed interval

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  14. def getIntervalArray(): IntervalArray[K, V]

  15. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  17. def isTraceEnabled(): Boolean

    Attributes
    protected
    Definition Classes
    Logging
  18. def log: Logger

    Attributes
    protected
    Definition Classes
    Logging
  19. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  20. def logDebug(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  21. def logError(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  22. def logError(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  23. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  24. def logInfo(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  25. def logName: String

    Attributes
    protected
    Definition Classes
    Logging
  26. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  27. def logTrace(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  28. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  29. def logWarning(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  30. def mapValues[V2](f: (V) ⇒ V2)(implicit arg0: ClassTag[V2]): IntervalPartition[K, V2]

    Applies a map function over the interval tree

  31. def mergePartitions(p: IntervalPartition[K, V]): IntervalPartition[K, V]

    Merges trees of this partition with a specified partition

    Merges trees of this partition with a specified partition

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  32. def multiput(kvs: Iterator[(K, V)]): IntervalPartition[K, V]

    Puts all (k,v) data from partition within the specificed interval

    Puts all (k,v) data from partition within the specificed interval

    returns

    IntervalPartition with new data

  33. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  34. final def notify(): Unit

    Definition Classes
    AnyRef
  35. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  36. def put(kv: (K, V)): IntervalPartition[K, V]

    Puts all (k,v) data from partition within the specificed interval

    Puts all (k,v) data from partition within the specificed interval

    returns

    IntervalPartition with new data

  37. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  38. def toString(): String

    Definition Classes
    AnyRef → Any
  39. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  40. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  41. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  42. def withMap(map: IntervalArray[K, V]): IntervalPartition[K, V]

    Attributes
    protected

Inherited from Logging

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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