Class

org.bdgenomics.utils.interval.rdd

IntervalPartition

Related Doc: package rdd

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class IntervalPartition[K <: Interval[K], V] extends Serializable

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protected
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Instance Constructors

  1. new IntervalPartition(array: IntervalArray[K, V])(implicit arg0: ClassTag[K], arg1: ClassTag[V])

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val array: IntervalArray[K, V]

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    protected
  5. final def asInstanceOf[T0]: T0

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  6. def clone(): AnyRef

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    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

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  8. def equals(arg0: Any): Boolean

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  9. def filter(pred: ((K, V)) ⇒ Boolean): IntervalPartition[K, V]

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    Return a new IntervalPartition filtered by some predicate.

  10. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )
  11. def get(): Iterable[(K, V)]

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    Gets all (k,v) data from partition

    Gets all (k,v) data from partition

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  12. def get(r: K): Iterable[(K, V)]

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    Gets all (k,v) data from partition within the specificed interval

    Gets all (k,v) data from partition within the specificed interval

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  13. final def getClass(): Class[_]

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  14. def getIntervalArray(): IntervalArray[K, V]

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    Fetches IntervalArray

    Fetches IntervalArray

    returns

    IntervalArray stored in IntervalPartition

  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

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  17. def mapValues[V2](f: (V) ⇒ V2)(implicit arg0: ClassTag[V2]): IntervalPartition[K, V2]

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    Applies a map function over the interval tree.

    Applies a map function over the interval tree.

    f

    Function converting type V to V2

    returns

    new IntervalPartition of type (k, V2)

  18. def mergePartitions(p: IntervalPartition[K, V]): IntervalPartition[K, V]

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    Merges trees of this partition with a specified partition.

    Merges trees of this partition with a specified partition.

    p

    IntervalPartition of (K, V)

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  19. def multiput(kvs: Iterator[(K, V)]): IntervalPartition[K, V]

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    Puts all (k,v) data from partition within the specificed interval.

    Puts all (k,v) data from partition within the specificed interval.

    kvs

    Iterator of (K, V) pairs

    returns

    IntervalPartition with new data

  20. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
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  21. final def notify(): Unit

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  22. final def notifyAll(): Unit

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  23. def put(kv: (K, V)): IntervalPartition[K, V]

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    Puts all (k,v) data from partition within the specificed interval.

    Puts all (k,v) data from partition within the specificed interval.

    returns

    IntervalPartition with new data

  24. final def synchronized[T0](arg0: ⇒ T0): T0

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  25. def toString(): String

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  26. final def wait(): Unit

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    @throws( ... )
  27. final def wait(arg0: Long, arg1: Int): Unit

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  28. final def wait(arg0: Long): Unit

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  29. def withMap(map: IntervalArray[K, V]): IntervalPartition[K, V]

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    Generates a new IntervalPartition from an IntervalArray.

    Generates a new IntervalPartition from an IntervalArray.

    map

    IntervalArray to store in IntervalPartition

    returns

    new IntervalPartition with underlying map structure

    Attributes
    protected

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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