Object/Trait

org.bdgenomics.utils.interval.array

IntervalArray

Related Docs: trait IntervalArray | package array

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object IntervalArray extends Serializable

Companion object for building an IntervalArray from an RDD.

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply[K <: Interval[K], T](array: Array[(K, T)], maxIntervalWidth: Long, sorted: Boolean = true)(implicit arg0: ClassTag[K], arg1: ClassTag[T]): IntervalArray[K, T]

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  5. def apply[K <: Interval[K], T](rdd: RDD[(K, T)])(implicit arg0: ClassTag[K], arg1: ClassTag[T]): IntervalArray[K, T]

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    Sorts the RDD and collects it to build an IntervalArray, a sorted array that searches over intervals.

    Sorts the RDD and collects it to build an IntervalArray, a sorted array that searches over intervals. This is used for a left side of the broadcast region join in ADAM.

    rdd

    RDD to build a IntervalArray from.

    returns

    The IntervalArray built from this RDD.

  6. def apply[K <: Interval[K], T](rdd: RDD[(K, T)], buildFn: (Array[(K, T)], Long) ⇒ IntervalArray[K, T])(implicit arg0: ClassTag[K], arg1: ClassTag[T]): IntervalArray[K, T]

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    Sorts the RDD and collects it to build an IntervalArray, a sorted array that searches over intervals.

    Sorts the RDD and collects it to build an IntervalArray, a sorted array that searches over intervals. This is used for a left side of the broadcast region join in ADAM.

    rdd

    RDD to build a IntervalArray from.

    returns

    The IntervalArray built from this RDD.

  7. final def asInstanceOf[T0]: T0

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  8. def clone(): AnyRef

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  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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