Class

org.bdgenomics.utils.interval.rdd

IntervalPartition

Related Doc: package rdd

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class IntervalPartition[K <: Interval[K], V] extends Serializable with Logging

Attributes
protected
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Logging, Serializable, Serializable, AnyRef, Any
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Instance Constructors

  1. new IntervalPartition(array: IntervalArray[K, V])(implicit arg0: ClassTag[K], arg1: ClassTag[V])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. val array: IntervalArray[K, V]

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    protected
  5. final def asInstanceOf[T0]: T0

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    Any
  6. def clone(): AnyRef

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    protected[java.lang]
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    Annotations
    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

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    AnyRef
  8. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  9. def filter(pred: ((K, V)) ⇒ Boolean): IntervalPartition[K, V]

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    Return a new IntervalPartition filtered by some predicate.

  10. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  11. def get(): Iterable[(K, V)]

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    Gets all (k,v) data from partition

    Gets all (k,v) data from partition

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  12. def get(r: K): Iterable[(K, V)]

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    Gets all (k,v) data from partition within the specificed interval

    Gets all (k,v) data from partition within the specificed interval

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  13. final def getClass(): Class[_]

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    Definition Classes
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  14. def getIntervalArray(): IntervalArray[K, V]

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    Fetches IntervalArray

    Fetches IntervalArray

    returns

    IntervalArray stored in IntervalPartition

  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  17. def isTraceEnabled(): Boolean

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    Attributes
    protected
    Definition Classes
    Logging
  18. def log: Logger

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    Logging
  19. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

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    Logging
  20. def logDebug(msg: ⇒ String): Unit

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    Logging
  21. def logError(msg: ⇒ String, throwable: Throwable): Unit

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    Logging
  22. def logError(msg: ⇒ String): Unit

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    Logging
  23. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

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    Definition Classes
    Logging
  24. def logInfo(msg: ⇒ String): Unit

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    Definition Classes
    Logging
  25. def logName: String

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    Logging
  26. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

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    Definition Classes
    Logging
  27. def logTrace(msg: ⇒ String): Unit

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    Definition Classes
    Logging
  28. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

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    Logging
  29. def logWarning(msg: ⇒ String): Unit

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    Definition Classes
    Logging
  30. def mapValues[V2](f: (V) ⇒ V2)(implicit arg0: ClassTag[V2]): IntervalPartition[K, V2]

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    Applies a map function over the interval tree.

    Applies a map function over the interval tree.

    f

    Function converting type V to V2

    returns

    new IntervalPartition of type (k, V2)

  31. def mergePartitions(p: IntervalPartition[K, V]): IntervalPartition[K, V]

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    Merges trees of this partition with a specified partition.

    Merges trees of this partition with a specified partition.

    p

    IntervalPartition of (K, V)

    returns

    Iterator of searched interval and the corresponding (K,V) pairs

  32. def multiput(kvs: Iterator[(K, V)]): IntervalPartition[K, V]

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    Puts all (k,v) data from partition within the specificed interval.

    Puts all (k,v) data from partition within the specificed interval.

    kvs

    Iterator of (K, V) pairs

    returns

    IntervalPartition with new data

  33. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  34. final def notify(): Unit

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    AnyRef
  35. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  36. def put(kv: (K, V)): IntervalPartition[K, V]

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    Puts all (k,v) data from partition within the specificed interval.

    Puts all (k,v) data from partition within the specificed interval.

    returns

    IntervalPartition with new data

  37. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  38. def toString(): String

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    AnyRef → Any
  39. final def wait(): Unit

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    AnyRef
    Annotations
    @throws( ... )
  40. final def wait(arg0: Long, arg1: Int): Unit

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    Annotations
    @throws( ... )
  41. final def wait(arg0: Long): Unit

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    @throws( ... )
  42. def withMap(map: IntervalArray[K, V]): IntervalPartition[K, V]

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    Generates a new IntervalPartition from an IntervalArray.

    Generates a new IntervalPartition from an IntervalArray.

    map

    IntervalArray to store in IntervalPartition

    returns

    new IntervalPartition with underlying map structure

    Attributes
    protected

Inherited from Logging

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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