org.bdgenomics.utils.io

HTTPRangedByteAccess

class HTTPRangedByteAccess extends ByteAccess with Logging

HTTPRangedByteAccess supports Ranged GET queries against HTTP resources.

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Logging, ByteAccess, AnyRef, Any
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  2. Logging
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Instance Constructors

  1. new HTTPRangedByteAccess(uri: URI, retries: Int = 3)

    uri

    The URL of the resource, which should support ranged queries

    retries

    Number of times to retry a failed connection before giving up

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  5. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  10. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  12. def isTraceEnabled(): Boolean

    Attributes
    protected
    Definition Classes
    Logging
  13. def length(): Long

    Definition Classes
    HTTPRangedByteAccessByteAccess
  14. def log: Logger

    Attributes
    protected
    Definition Classes
    Logging
  15. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  16. def logDebug(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  17. def logError(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  18. def logError(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  19. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  20. def logInfo(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  21. def logName: String

    Attributes
    protected
    Definition Classes
    Logging
  22. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  23. def logTrace(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  24. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  25. def logWarning(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  26. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  27. final def notify(): Unit

    Definition Classes
    AnyRef
  28. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  29. def readByteStream(offset: Long, length: Int): InputStream

    In this initial implementation, we throw an error when we get a partial response from the server whose content is less than the bytes we originally requested.

    In this initial implementation, we throw an error when we get a partial response from the server whose content is less than the bytes we originally requested.

    offset

    The offset into the resource at which we want to start reading bytes

    length

    The number of bytes to be read

    returns

    An InputStream from a ranged HTTP GET, which should contain just the requested bytes

    Definition Classes
    HTTPRangedByteAccessByteAccess
  30. def readFully(offset: Long, length: Int): Array[Byte]

    readFully is a helper method, for when you're going to use readByteStream and just read all the bytes immediately.

    readFully is a helper method, for when you're going to use readByteStream and just read all the bytes immediately.

    offset

    The offset in the resource at which you want to start reading

    length

    The number of bytes to read

    returns

    An Array of bytes read. The length of this array will be <= the 'length' argument.

    Definition Classes
    ByteAccess
  31. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  32. def toString(): String

    Definition Classes
    AnyRef → Any
  33. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  34. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  35. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Logging

Inherited from ByteAccess

Inherited from AnyRef

Inherited from Any

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