org.bdgenomics.utils.io

ByteAccess

trait ByteAccess extends AnyRef

ByteAccess is a wrapper trait around sources of bytes which are accessible at arbitrary offsets.

(We can use this to wrap byte buffers, S3, FileInputStreams, or even range-accessible web services.)

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Known Subclasses
ByteArrayByteAccess, HTTPRangedByteAccess, LocalFileByteAccess
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Abstract Value Members

  1. abstract def length(): Long

  2. abstract def readByteStream(offset: Long, length: Int): InputStream

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. final def eq(arg0: AnyRef): Boolean

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  8. def finalize(): Unit

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  9. final def getClass(): Class[_]

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  10. def hashCode(): Int

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  11. final def isInstanceOf[T0]: Boolean

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  12. final def ne(arg0: AnyRef): Boolean

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  13. final def notify(): Unit

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  14. final def notifyAll(): Unit

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  15. def readFully(offset: Long, length: Int): Array[Byte]

    readFully is a helper method, for when you're going to use readByteStream and just read all the bytes immediately.

    readFully is a helper method, for when you're going to use readByteStream and just read all the bytes immediately.

    offset

    The offset in the resource at which you want to start reading

    length

    The number of bytes to read

    returns

    An Array of bytes read. The length of this array will be <= the 'length' argument.

  16. final def synchronized[T0](arg0: ⇒ T0): T0

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  17. def toString(): String

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  18. final def wait(): Unit

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  19. final def wait(arg0: Long, arg1: Int): Unit

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  20. final def wait(arg0: Long): Unit

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