org.bdgenomics.utils.metrics.aggregators

Aggregator

trait Aggregator[SingleType, AggType <: Aggregated[SingleType]] extends Serializable

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Known Subclasses
CombinedAggregator, HistogramAggregator, UniqueAggregator
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Abstract Value Members

  1. abstract def combine(first: AggType, second: AggType): AggType

    Aggregation function to combine the result of a computation with prior results.

    Aggregation function to combine the result of a computation with prior results.

    first

    The first aggregation

    second

    The second aggregation

    returns

    An aggregation combining the values in the first and second aggregations.

  2. abstract def initialValue: AggType

    returns

    An initial value for the aggregation

  3. abstract def lift(value: Seq[SingleType]): AggType

    Aggregates a single sequence of values (which are produced by a single record-pair)

    Aggregates a single sequence of values (which are produced by a single record-pair)

    value

    The Seq[SingleType] produced by a Comparisons invocation on a ReadBucket

    returns

    The aggregation of that sequence.

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