org.bdgenomics.utils.metrics.aggregators

HistogramAggregator

class HistogramAggregator[T] extends Aggregator[T, Histogram[T]]

Linear Supertypes
Aggregator[T, Histogram[T]], Serializable, Serializable, AnyRef, Any
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  1. HistogramAggregator
  2. Aggregator
  3. Serializable
  4. Serializable
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Instance Constructors

  1. new HistogramAggregator()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
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  6. final def asInstanceOf[T0]: T0

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  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. def combine(first: Histogram[T], second: Histogram[T]): Histogram[T]

    Aggregation function to combine the result of a computation with prior results.

    Aggregation function to combine the result of a computation with prior results.

    first

    The first aggregation

    second

    The second aggregation

    returns

    An aggregation combining the values in the first and second aggregations.

    Definition Classes
    HistogramAggregatorAggregator
  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  10. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  13. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  14. def initialValue: Histogram[T]

    An initial value for the aggregation

    An initial value for the aggregation

    returns

    An initial value for the aggregation

    Definition Classes
    HistogramAggregatorAggregator
  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  16. def lift(value: Seq[T]): Histogram[T]

    Aggregates a single sequence of values (which are produced by a single record-pair)

    Aggregates a single sequence of values (which are produced by a single record-pair)

    value

    The Seq[SingleType] produced by a Comparisons invocation on a ReadBucket

    returns

    The aggregation of that sequence.

    Definition Classes
    HistogramAggregatorAggregator
  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  18. final def notify(): Unit

    Definition Classes
    AnyRef
  19. final def notifyAll(): Unit

    Definition Classes
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  20. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  21. def toString(): String

    Definition Classes
    AnyRef → Any
  22. final def wait(): Unit

    Definition Classes
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    @throws( ... )
  23. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )
  24. final def wait(arg0: Long): Unit

    Definition Classes
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    @throws( ... )

Inherited from Aggregator[T, Histogram[T]]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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