Trait

org.bdgenomics.utils.metrics.aggregators

Aggregator

Related Doc: package aggregators

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trait Aggregator[SingleType, AggType <: Aggregated[SingleType]] extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Known Subclasses
CombinedAggregator, HistogramAggregator, UniqueAggregator
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Abstract Value Members

  1. abstract def combine(first: AggType, second: AggType): AggType

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    Aggregation function to combine the result of a computation with prior results.

    Aggregation function to combine the result of a computation with prior results.

    first

    The first aggregation

    second

    The second aggregation

    returns

    An aggregation combining the values in the first and second aggregations.

  2. abstract def initialValue: AggType

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    returns

    An initial value for the aggregation

  3. abstract def lift(value: Seq[SingleType]): AggType

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    Aggregates a single sequence of values (which are produced by a single record-pair)

    Aggregates a single sequence of values (which are produced by a single record-pair)

    value

    The Seq[SingleType] produced by a Comparisons invocation on a ReadBucket

    returns

    The aggregation of that sequence.

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. final def eq(arg0: AnyRef): Boolean

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  7. def equals(arg0: Any): Boolean

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  8. def finalize(): Unit

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  9. final def getClass(): Class[_]

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  10. def hashCode(): Int

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  11. final def isInstanceOf[T0]: Boolean

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  12. final def ne(arg0: AnyRef): Boolean

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  13. final def notify(): Unit

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  14. final def notifyAll(): Unit

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  15. final def synchronized[T0](arg0: ⇒ T0): T0

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  16. def toString(): String

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  17. final def wait(): Unit

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  18. final def wait(arg0: Long, arg1: Int): Unit

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  19. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

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