#
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
–
deprecated
org
org.apache
org.apache.spark
org.apache.spark.rdd
(class)
AlignmentsPipedRDD
(class)
BioPipedRDD
(class)
ProcessDetails
(class)
VariantContextWithHeader
(class)
VariantsPipedRDD
org.biodatageeks
org.biodatageeks.alignment
(object)
AlignmentTools
(object)
CommandBuilder
(object)
Constants
(object)
(class)
CustomRDDSAMRecordFunctions
(object)
ReadsExtension
(object)
SeqTenderAlignment
(object)
TestFQMain
org.biodatageeks.alignment.partitioners
(class)
FastaRead
(class)
FastaReadInputFormat
(class)
FastqRead
(class)
FastqReadInputFormat
(class)
InterleavedFastqRead
(class)
InterleavedFastqReadInputFormat
(case class)
ReaderException
(class)
ReadInputFormat
(object)
ReadReader
(trait)
WritableText
org.biodatageeks.annotation
(object)
(class)
CustomVariantContextFunctions
(object)
SeqTenderVCF
(object)
TestVCFMain
(case class)
VariantContextWithHeaderRDD
org.biodatageeks.conf
(object)
InternalParams
org.biodatageeks.formats
(class)
BDGBAMOutputFormat
org.biodatageeks.utils
(object)
(class)
CustomRDDTextFunctions
(case class)
IllegalFileExtensionException
(object)
Tokenizer