org
.
biodatageeks
.
alignment
Constants
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package alignment
object
Constants
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final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
def
##
()
:
Int
Definition Classes
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final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
val
FIRST_SEGMENT_FLAG
: Int(64)
final
val
LAST_SEGMENT_FLAG
: Int(128)
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
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val
bowtie2ToolName
:
String
val
bowtieToolName
:
String
val
bwaToolName
:
String
def
clone
()
:
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Attributes
protected[
java.lang
]
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Annotations
@throws
(
...
)
val
defaultBWAImage
:
String
val
defaultBowtie2Image
:
String
val
defaultBowtieImage
:
String
val
defaultGem3Image
:
String
val
defaultMagicBlastImage
:
String
val
defaultMinimap2Image
:
String
final
val
defaultRG
: String("SM:Pool1")
final
val
defaultRGId
: String("test_id")
val
defaultSnapImage
:
String
val
defaultStarImage
:
String
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
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def
equals
(
arg0:
Any
)
:
Boolean
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val
faExtensions
:
List
[
String
]
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
classOf[java.lang.Throwable]
)
val
fqExtensions
:
List
[
String
]
val
gem3ToolName
:
String
final
def
getClass
()
:
Class
[_]
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def
hashCode
()
:
Int
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val
ifqExtensions
:
List
[
String
]
final
def
isInstanceOf
[
T0
]
:
Boolean
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val
magicBlastToolName
:
String
val
minimap2ToolName
:
String
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
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final
def
notify
()
:
Unit
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final
def
notifyAll
()
:
Unit
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val
snapToolName
:
String
val
starToolName
:
String
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
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def
toString
()
:
String
Definition Classes
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final
def
wait
()
:
Unit
Definition Classes
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Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
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@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
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@throws
(
...
)
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