Class

org.biodatageeks.alignment.partitioners

FastqRead

Related Doc: package partitioners

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class FastqRead extends FastaRead

Linear Supertypes
FastaRead, WritableText, Writable, AnyRef, Any
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Inherited
  1. FastqRead
  2. FastaRead
  3. WritableText
  4. Writable
  5. AnyRef
  6. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new FastqRead()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val HASH_CONST: Int

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    Attributes
    protected
    Definition Classes
    WritableText

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clear(): Unit

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    Definition Classes
    FastqRead → FastaRead

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  9. def equals(other: Any): Boolean

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    Definition Classes
    FastqRead → FastaRead → AnyRef → Any

  10. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  12. def getName(): Text

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    Definition Classes
    FastaRead

  13. def getQuality(): Text

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  14. def getSequence(): Text

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    Definition Classes
    FastaRead

  15. def hashCode(): Int

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    Definition Classes
    FastqRead → FastaRead → AnyRef → Any

  16. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  17. var name: Text

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    Definition Classes
    FastaRead

  18. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  19. final def notify(): Unit

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    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  21. var quality: Text

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  22. def readFields(in: DataInput): Unit

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    Definition Classes
    FastqRead → FastaRead → Writable

  23. var sequence: Text

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    Definition Classes
    FastaRead

  24. def setName(arg0: Text): Unit

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    Definition Classes
    FastaRead

  25. def setQuality(arg0: Text): Unit

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  26. def setSequence(arg0: Text): Unit

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    Definition Classes
    FastaRead

  27. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  28. def toString(): String

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    Definition Classes
    FastqRead → FastaRead → AnyRef → Any

  29. def toText: Text

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    Definition Classes
    FastaRead → WritableText

  30. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  32. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  33. def write(out: DataOutput): Unit

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    Definition Classes
    FastqRead → FastaRead → Writable

Inherited from FastaRead

Inherited from WritableText

Inherited from Writable

Inherited from AnyRef

Inherited from Any

Ungrouped