Class

org.biodatageeks.alignment.partitioners.InterleavedFastqReadInputFormat

InterleavedFastqReadRecordReader

Related Doc: package InterleavedFastqReadInputFormat

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class InterleavedFastqReadRecordReader extends ReadRecordReader[InterleavedFastqRead]

Linear Supertypes
InterleavedFastqReadInputFormat.ReadRecordReader[InterleavedFastqRead], RecordReader[Text, InterleavedFastqRead], Closeable, AutoCloseable, AnyRef, Any
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Inherited
  1. InterleavedFastqReadRecordReader
  2. ReadRecordReader
  3. RecordReader
  4. Closeable
  5. AutoCloseable
  6. AnyRef
  7. Any
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Visibility
  1. Public
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Instance Constructors

  1. new InterleavedFastqReadRecordReader(conf: Configuration, split: FileSplit)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. def close(): Unit

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    Definition Classes
    ReadRecordReader → RecordReader → Closeable → AutoCloseable

  7. val codec: CompressionCodec

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    Definition Classes
    ReadRecordReader

  8. val codecFactory: CompressionCodecFactory

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    Definition Classes
    ReadRecordReader

  9. val conf: Configuration

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    Definition Classes
    InterleavedFastqReadRecordReader → ReadRecordReader

  10. var currentValue: InterleavedFastqRead

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    Attributes
    protected
    Definition Classes
    ReadRecordReader

  11. var end: Long

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    Attributes
    protected
    Definition Classes
    ReadRecordReader

  12. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  14. val file: Path

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    Attributes
    protected
    Definition Classes
    ReadRecordReader

  15. val fileIn: FSDataInputStream

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    Definition Classes
    ReadRecordReader

  16. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  17. val fs: FileSystem

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    Definition Classes
    ReadRecordReader

  18. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  19. def getCurrentKey(): Text

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    Definition Classes
    ReadRecordReader → RecordReader

  20. def getCurrentValue(): InterleavedFastqRead

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    Definition Classes
    InterleavedFastqReadRecordReader → RecordReader

  21. def getProgress(): Float

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    Definition Classes
    ReadRecordReader → RecordReader

  22. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  23. def initialize(split: InputSplit, context: TaskAttemptContext): Unit

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    Definition Classes
    ReadRecordReader → RecordReader

  24. def isFirstRecordNameLine(bytesRead: Int, buffer: Text, reader: LineReader, stream: FSDataInputStream): Boolean

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    Attributes
    protected
    Definition Classes
    InterleavedFastqReadRecordReader → ReadRecordReader

  25. def isFirstRecordValid(reader: LineReader, stream: FSDataInputStream): Boolean

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    Definition Classes
    InterleavedFastqReadRecordReader → ReadRecordReader

  26. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  27. var lineReader: LineReader

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    Attributes
    protected
    Definition Classes
    ReadRecordReader

  28. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  29. def nextKeyValue(): Boolean

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    Definition Classes
    ReadRecordReader → RecordReader

  30. final def notify(): Unit

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    Definition Classes
    AnyRef

  31. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  32. var pos: Long

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    Attributes
    protected
    Definition Classes
    ReadRecordReader

  33. def setValidRead(key: Text, value: InterleavedFastqRead): Unit

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    Attributes
    protected
    Definition Classes
    InterleavedFastqReadRecordReader → ReadRecordReader

  34. val split: FileSplit

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    Definition Classes
    InterleavedFastqReadRecordReader → ReadRecordReader

  35. var start: Long

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    Attributes
    protected
    Definition Classes
    ReadRecordReader

  36. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  37. def toString(): String

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    Definition Classes
    AnyRef → Any

  38. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  39. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  40. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from InterleavedFastqReadInputFormat.ReadRecordReader[InterleavedFastqRead]

Inherited from RecordReader[Text, InterleavedFastqRead]

Inherited from Closeable

Inherited from AutoCloseable

Inherited from AnyRef

Inherited from Any

Ungrouped