Class

org.biodatageeks.sequila.pileup.model

ReadQualSummary

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case class ReadQualSummary(start: Int, end: Int, qualsArray: Array[Byte], cigarDerivedConf: CigarDerivedConf) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. ReadQualSummary
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
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Visibility
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Instance Constructors

  1. new ReadQualSummary(start: Int, end: Int, qualsArray: Array[Byte], cigarDerivedConf: CigarDerivedConf)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. val cigarDerivedConf: CigarDerivedConf

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  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. val end: Int

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  8. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. def getBaseQualityForPosition(position: Int): Byte

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    Annotations
    @inline()

  11. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  12. def hasDeletionOnPosition(pos: Int): Boolean

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    Annotations
    @inline()

  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  14. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  15. final def notify(): Unit

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    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  17. def overlapsPosition(pos: Int): Boolean

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    Annotations
    @inline()

  18. val qualsArray: Array[Byte]

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  19. def relativePosition(absPosition: Int): Int

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    Annotations
    @inline()

  20. val start: Int

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  21. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  22. final def wait(): Unit

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    Annotations
    @throws( ... )

  23. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  24. final def wait(arg0: Long): Unit

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    Definition Classes
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    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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