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org.biodatageeks.sequila.pileup.serializers

PileupProjection

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object PileupProjection

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def calculateAltsMapSizes(map: Map[Byte, Short]): (Int, Int, Int)

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  6. def calculateQualMapSizes(map: Map[Byte, Array[Short]]): (Int, Int, Int)

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  7. def clone(): AnyRef

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  8. var contigByteMap: HashMap[String, Array[Byte]]

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  9. var contigMap: HashMap[String, String]

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  10. def convertToRow(contig: String, start: Int, end: Int, bases: String, cov: Short, refCount: Short, altsCount: Short, altsMap: Map[Byte, Short], qualsMap: Map[Byte, Array[Short]]): UnsafeRow

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  11. final def eq(arg0: AnyRef): Boolean

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  12. def equals(arg0: Any): Boolean

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  13. def finalize(): Unit

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  14. final def getClass(): Class[_]

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  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

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  17. final def ne(arg0: AnyRef): Boolean

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  18. final def notify(): Unit

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  19. final def notifyAll(): Unit

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  20. def setContigMap(cMap: HashMap[String, String]): Unit

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  21. final def synchronized[T0](arg0: ⇒ T0): T0

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  22. def toString(): String

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  23. final def wait(): Unit

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  24. final def wait(arg0: Long, arg1: Int): Unit

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  25. final def wait(arg0: Long): Unit

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  26. def writeMap(data: Array[Byte], map: Map[Byte, Short], headerOffset: Int, arraysOffset: Int): Unit

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  27. def writeQualsMap(data: Array[Byte], map: Map[Byte, Array[Short]], headerOffset: Int, arraysOffset: Int): Unit

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