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org.biodatageeks.sequila.utils

InternalParams

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object InternalParams

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final val BAMCTASCmd: String("spark.biodatageeks.bam.bam_ctas_cmd")

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  5. final val BAMCTASDir: String("spark.biodatageeks.bam.bam_ctas_dir")

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  6. final val BAMCTASFilter: String("spark.biodatageeks.bam.bam_ctas_filter")

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  7. final val BAMCTASHeaderPath: String("spark.biodatageeks.bam.bam_header_path")

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  8. final val BAMCTASLimit: String("spark.biodatageeks.bam.bam_ctas_limit")

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  9. final val BAMCTASOutputPath: String("spark.biodatageeks.bam.output_path")

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  10. final val BAMValidationStringency: String("spark.biodatageeks.bam.validation")

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  11. final val EnableInstrumentation: String("spark.biodatageeks.instrumentation")

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  12. final val IOReadAlignmentMethod: String("spark.biodatageeks.readAligment.method")

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  13. final val InputSplitSize: String("spark.biodatageeks.bam.splitSize")

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  14. final val RDDEventsName: String("spark.biodatageeks.events")

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  15. final val SerializationMode: String("spark.biodatageeks.serialization")

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  16. final val ShowAllPositions: String("spark.biodatageeks.coverage.allPositions")

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  17. final val UseIntelGKL: String("spark.biodatageeks.bam.useGKLInflate")

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  18. final def asInstanceOf[T0]: T0

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  19. def clone(): AnyRef

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  20. final def eq(arg0: AnyRef): Boolean

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  21. def equals(arg0: Any): Boolean

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  22. final val filterReadsByFlag: String("spark.biodatageeks.coverage.filterFlag")

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  23. def finalize(): Unit

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  24. final def getClass(): Class[_]

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  25. def hashCode(): Int

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  26. final def isInstanceOf[T0]: Boolean

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  27. final val maxBaseQualityValue: String("spark.biodatageeks.pileup.maxBaseQuality")

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  28. final def ne(arg0: AnyRef): Boolean

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  29. final def notify(): Unit

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  30. final def notifyAll(): Unit

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  31. final def synchronized[T0](arg0: ⇒ T0): T0

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  32. def toString(): String

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  33. final def wait(): Unit

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  34. final def wait(arg0: Long, arg1: Int): Unit

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  35. final def wait(arg0: Long): Unit

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