Class

org.biodatageeks.sequila.utvf

GenomicIntervalPlan

Related Doc: package utvf

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case class GenomicIntervalPlan(plan: LogicalPlan, spark: SparkSession, interval: GIntervalRow, output: Seq[Attribute]) extends SparkPlan with Serializable with Product

Linear Supertypes
SparkPlan, Serializable, Serializable, Logging, QueryPlan[SparkPlan], TreeNode[SparkPlan], Product, Equals, AnyRef, Any
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Inherited
  1. GenomicIntervalPlan
  2. SparkPlan
  3. Serializable
  4. Serializable
  5. Logging
  6. QueryPlan
  7. TreeNode
  8. Product
  9. Equals
  10. AnyRef
  11. Any
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Visibility
  1. Public
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Instance Constructors

  1. new GenomicIntervalPlan(plan: LogicalPlan, spark: SparkSession, interval: GIntervalRow, output: Seq[Attribute])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. lazy val allAttributes: AttributeSeq

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    Definition Classes
    QueryPlan

  5. def apply(number: Int): TreeNode[_]

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    Definition Classes
    TreeNode

  6. def argString: String

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    Definition Classes
    TreeNode

  7. def asCode: String

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    Definition Classes
    TreeNode

  8. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  9. final lazy val canonicalized: SparkPlan

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    Definition Classes
    QueryPlan

  10. def children: Seq[SparkPlan]

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    Definition Classes
    GenomicIntervalPlan → TreeNode

  11. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  12. def collect[B](pf: PartialFunction[SparkPlan, B]): Seq[B]

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    Definition Classes
    TreeNode

  13. def collectFirst[B](pf: PartialFunction[SparkPlan, B]): Option[B]

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    Definition Classes
    TreeNode

  14. def collectLeaves(): Seq[SparkPlan]

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    Definition Classes
    TreeNode

  15. def conf: SQLConf

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    Definition Classes
    QueryPlan

  16. lazy val containsChild: Set[TreeNode[_]]

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    Definition Classes
    TreeNode

  17. def doCanonicalize(): SparkPlan

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    Attributes
    protected
    Definition Classes
    QueryPlan

  18. def doExecute(): RDD[InternalRow]

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    Definition Classes
    GenomicIntervalPlan → SparkPlan

  19. def doExecuteBroadcast[T](): Broadcast[T]

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    Attributes
    protected[org.apache.spark.sql]
    Definition Classes
    SparkPlan

  20. def doPrepare(): Unit

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    Attributes
    protected
    Definition Classes
    SparkPlan

  21. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  22. final def execute(): RDD[InternalRow]

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    Definition Classes
    SparkPlan

  23. final def executeBroadcast[T](): Broadcast[T]

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    Definition Classes
    SparkPlan

  24. def executeCollect(): Array[InternalRow]

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    Definition Classes
    SparkPlan

  25. def executeCollectPublic(): Array[Row]

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    Definition Classes
    SparkPlan

  26. final def executeQuery[T](query: ⇒ T): T

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    Attributes
    protected
    Definition Classes
    SparkPlan

  27. def executeTake(n: Int): Array[InternalRow]

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    Definition Classes
    SparkPlan

  28. def executeToIterator(): Iterator[InternalRow]

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    Definition Classes
    SparkPlan

  29. final def expressions: Seq[Expression]

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    Definition Classes
    QueryPlan

  30. def fastEquals(other: TreeNode[_]): Boolean

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    Definition Classes
    TreeNode

  31. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  32. def find(f: (SparkPlan) ⇒ Boolean): Option[SparkPlan]

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    Definition Classes
    TreeNode

  33. def flatMap[A](f: (SparkPlan) ⇒ TraversableOnce[A]): Seq[A]

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    Definition Classes
    TreeNode

  34. def foreach(f: (SparkPlan) ⇒ Unit): Unit

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    Definition Classes
    TreeNode

  35. def foreachUp(f: (SparkPlan) ⇒ Unit): Unit

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    Definition Classes
    TreeNode

  36. def generateTreeString(depth: Int, lastChildren: Seq[Boolean], builder: StringBuilder, verbose: Boolean, prefix: String, addSuffix: Boolean): StringBuilder

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    Definition Classes
    TreeNode

  37. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  38. def hashCode(): Int

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    Definition Classes
    TreeNode → AnyRef → Any

  39. def initializeLogIfNecessary(isInterpreter: Boolean, silent: Boolean): Boolean

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    Attributes
    protected
    Definition Classes
    Logging

  40. def initializeLogIfNecessary(isInterpreter: Boolean): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  41. def innerChildren: Seq[QueryPlan[_]]

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    Attributes
    protected
    Definition Classes
    QueryPlan → TreeNode

  42. def inputSet: AttributeSet

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    Definition Classes
    QueryPlan

  43. val interval: GIntervalRow

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  44. def isCanonicalizedPlan: Boolean

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    Attributes
    protected
    Definition Classes
    QueryPlan

  45. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  46. def isTraceEnabled(): Boolean

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    Attributes
    protected
    Definition Classes
    Logging

  47. def jsonFields: List[JField]

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    Attributes
    protected
    Definition Classes
    TreeNode

  48. def log: Logger

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    Attributes
    protected
    Definition Classes
    Logging

  49. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  50. def logDebug(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  51. def logError(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  52. def logError(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  53. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  54. def logInfo(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  55. def logName: String

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    Attributes
    protected
    Definition Classes
    Logging

  56. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  57. def logTrace(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  58. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  59. def logWarning(msg: ⇒ String): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  60. def longMetric(name: String): SQLMetric

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    Definition Classes
    SparkPlan

  61. def makeCopy(newArgs: Array[AnyRef]): SparkPlan

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    Definition Classes
    SparkPlan → TreeNode

  62. def map[A](f: (SparkPlan) ⇒ A): Seq[A]

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    Definition Classes
    TreeNode

  63. def mapChildren(f: (SparkPlan) ⇒ SparkPlan): SparkPlan

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    Definition Classes
    TreeNode

  64. def mapExpressions(f: (Expression) ⇒ Expression): GenomicIntervalPlan.this.type

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    Definition Classes
    QueryPlan

  65. def mapProductIterator[B](f: (Any) ⇒ B)(implicit arg0: ClassTag[B]): Array[B]

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    Attributes
    protected
    Definition Classes
    TreeNode

  66. def metrics: Map[String, SQLMetric]

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    Definition Classes
    SparkPlan

  67. def missingInput: AttributeSet

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    Definition Classes
    QueryPlan

  68. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  69. def newMutableProjection(expressions: Seq[Expression], inputSchema: Seq[Attribute], useSubexprElimination: Boolean): MutableProjection

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    Attributes
    protected
    Definition Classes
    SparkPlan

  70. def newNaturalAscendingOrdering(dataTypes: Seq[DataType]): Ordering[InternalRow]

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    Attributes
    protected
    Definition Classes
    SparkPlan

  71. def newOrdering(order: Seq[SortOrder], inputSchema: Seq[Attribute]): Ordering[InternalRow]

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    Attributes
    protected
    Definition Classes
    SparkPlan

  72. def newPredicate(expression: Expression, inputSchema: Seq[Attribute]): Predicate

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    Attributes
    protected
    Definition Classes
    SparkPlan

  73. def nodeName: String

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    Definition Classes
    TreeNode

  74. final def notify(): Unit

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    Definition Classes
    AnyRef

  75. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  76. def numberedTreeString: String

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    Definition Classes
    TreeNode

  77. val origin: Origin

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    Definition Classes
    TreeNode

  78. def otherCopyArgs: Seq[AnyRef]

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    Attributes
    protected
    Definition Classes
    TreeNode

  79. val output: Seq[Attribute]

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    Definition Classes
    GenomicIntervalPlan → QueryPlan

  80. def outputOrdering: Seq[SortOrder]

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    Definition Classes
    SparkPlan

  81. def outputPartitioning: Partitioning

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    Definition Classes
    SparkPlan

  82. def outputSet: AttributeSet

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    Definition Classes
    QueryPlan

  83. def p(number: Int): SparkPlan

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    Definition Classes
    TreeNode

  84. val plan: LogicalPlan

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  85. final def prepare(): Unit

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    Definition Classes
    SparkPlan

  86. def prepareSubqueries(): Unit

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    Attributes
    protected
    Definition Classes
    SparkPlan

  87. def prettyJson: String

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    Definition Classes
    TreeNode

  88. def printSchema(): Unit

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    Definition Classes
    QueryPlan

  89. def producedAttributes: AttributeSet

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    Definition Classes
    QueryPlan

  90. def references: AttributeSet

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    Definition Classes
    QueryPlan

  91. def requiredChildDistribution: Seq[Distribution]

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    Definition Classes
    SparkPlan

  92. def requiredChildOrdering: Seq[Seq[SortOrder]]

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    Definition Classes
    SparkPlan

  93. def resetMetrics(): Unit

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    Definition Classes
    SparkPlan

  94. final def sameResult(other: SparkPlan): Boolean

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    Definition Classes
    QueryPlan

  95. lazy val schema: StructType

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    Definition Classes
    QueryPlan

  96. def schemaString: String

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    Definition Classes
    QueryPlan

  97. final def semanticHash(): Int

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    Definition Classes
    QueryPlan

  98. def simpleString: String

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    Definition Classes
    QueryPlan → TreeNode

  99. val spark: SparkSession

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  100. def sparkContext: SparkContext

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    Attributes
    protected
    Definition Classes
    SparkPlan

  101. final val sqlContext: SQLContext

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    Definition Classes
    SparkPlan

  102. def statePrefix: String

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    Attributes
    protected
    Definition Classes
    QueryPlan

  103. def stringArgs: Iterator[Any]

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    Attributes
    protected
    Definition Classes
    TreeNode

  104. val subexpressionEliminationEnabled: Boolean

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    Definition Classes
    SparkPlan

  105. def subqueries: Seq[SparkPlan]

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    Definition Classes
    QueryPlan

  106. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  107. def toJSON: String

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    Definition Classes
    TreeNode

  108. def toString(): String

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    Definition Classes
    TreeNode → AnyRef → Any

  109. def transform(rule: PartialFunction[SparkPlan, SparkPlan]): SparkPlan

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    Definition Classes
    TreeNode

  110. def transformAllExpressions(rule: PartialFunction[Expression, Expression]): GenomicIntervalPlan.this.type

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    Definition Classes
    QueryPlan

  111. def transformDown(rule: PartialFunction[SparkPlan, SparkPlan]): SparkPlan

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    Definition Classes
    TreeNode

  112. def transformExpressions(rule: PartialFunction[Expression, Expression]): GenomicIntervalPlan.this.type

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    Definition Classes
    QueryPlan

  113. def transformExpressionsDown(rule: PartialFunction[Expression, Expression]): GenomicIntervalPlan.this.type

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    Definition Classes
    QueryPlan

  114. def transformExpressionsUp(rule: PartialFunction[Expression, Expression]): GenomicIntervalPlan.this.type

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    Definition Classes
    QueryPlan

  115. def transformUp(rule: PartialFunction[SparkPlan, SparkPlan]): SparkPlan

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    Definition Classes
    TreeNode

  116. def treeString(verbose: Boolean, addSuffix: Boolean): String

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    Definition Classes
    TreeNode

  117. def treeString: String

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    Definition Classes
    TreeNode

  118. def verboseString: String

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    Definition Classes
    QueryPlan → TreeNode

  119. def verboseStringWithSuffix: String

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    Definition Classes
    TreeNode

  120. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  121. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  122. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  123. def waitForSubqueries(): Unit

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    Attributes
    protected
    Definition Classes
    SparkPlan

  124. def withNewChildren(newChildren: Seq[SparkPlan]): SparkPlan

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    Definition Classes
    TreeNode

Inherited from SparkPlan

Inherited from Serializable

Inherited from Serializable

Inherited from Logging

Inherited from QueryPlan[SparkPlan]

Inherited from TreeNode[SparkPlan]

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped