TAG
Columns
THICK_END
Columns
THICK_START
Columns
TILE
Columns
TLEN
Columns
TableFuncs
utils
Tail
broadcast
TailAltsTimer
PileupTimers
TailCovTimer
PileupTimers
TailEdgeTimer
PileupTimers
TestMetaRecord
metrics
Throwable
scala
Traversable
scala
TraversableOnce
scala
TwoPhaseJoin
RangeJoinMethod
table
BDGCoveragePlan
tableName
BDGCoverage PileupTemplate PileupPlan
tableNames
TestMetaRecord
tablePath
BDGAlignmentRelation
tableRowcounts
TestMetaRecord
tag_AM
Alignment
tag_AS
Alignment
tag_BC
Alignment
tag_BQ
Alignment
tag_BZ
Alignment
tag_CB
Alignment
tag_CC
Alignment
tag_CG
Alignment
tag_CM
Alignment
tag_CO
Alignment
tag_CP
Alignment
tag_CQ
Alignment
tag_CR
Alignment
tag_CS
Alignment
tag_CT
Alignment
tag_CY
Alignment
tag_E2
Alignment
tag_FI
Alignment
tag_FS
Alignment
tag_FZ
Alignment
tag_H0
Alignment
tag_H1
Alignment
tag_H2
Alignment
tag_HI
Alignment
tag_IH
Alignment
tag_LB
Alignment
tag_MC
Alignment
tag_MD
Alignment
tag_MI
Alignment
tag_MQ
Alignment
tag_NH
Alignment
tag_NM
Alignment
tag_OA
Alignment
tag_OC
Alignment
tag_OP
Alignment
tag_OQ
Alignment
tag_OX
Alignment
tag_PG
Alignment
tag_PQ
Alignment
tag_PT
Alignment
tag_PU
Alignment
tag_Q2
Alignment
tag_QT
Alignment
tag_QX
Alignment
tag_R2
Alignment
tag_RG
Alignment
tag_RX
Alignment
tag_SA
Alignment
tag_SM
Alignment
tag_TC
Alignment
tag_U2
Alignment
tag_UQ
Alignment
tails
PileupUpdate
target
BDGCoverage BDGCoveragePlan
testId
TestMetaRecord
thick_end
BrowserExtensibleData
thick_start
BrowserExtensibleData
thriftserver
hive
tile
SequencedFragment
time
MetricsCollector
timers
pileup performance
timestamp
TestMetaRecord
tlen
Alignment
toPileup
AggregateRDD
toSQL
BDGCoverage PileupTemplate
toString
Conf
totalEntries
SingleLocusQualsExtension
transformSamtoolsResult
PileupConverter
transformations
methods
translateFilter
SequilaDataSourceStrategy
trim
MultiLociQualsExtension SingleLocusQualsExtension
trimQuals
ContigAggregate