1. com
   1. com.github
      1. com.github.clulab
         1. com.github.clulab.eidos
            1. (case class)Version
            2. (object)
               Versions
2. org
   1. org.clulab
      1. org.clulab.wm
         1. org.clulab.wm.eidos
            1. (object)
               Aliases
            2. (object)
               BuildInfo
            3. (class)ComponentLoader
            4. (object)(class)EidosActions
            5. (case class)EidosComponents
            6. (object)(class)EidosComponentsBuilder
            7. (class)EidosEnglishProcessor
            8. (class)EidosPortugueseProcessor
            9. (object)
               EidosProcessor
            10. (class)EidosRefiner
            11. (class)EidosSpanishProcessor
            12. (object)(class)EidosSystem
            13. (object)(class)EidosTokenizer
            14. (trait)LanguageSpecific
            15. (class)OdinRefiner
            16. (object)(class)ParagraphSplitter
            17. (class)Refiner
            18. (trait)SentencesExtractor
            1. org.clulab.wm.eidos.actions
               1. (object)(class)CausalBasicCorefHandler
               2. (object)(trait)CorefHandler
               3. (object)(class)MigrationHandler
            2. org.clulab.wm.eidos.apps
               1. (object)
                  AnnotationSheetAndSummary
               2. (object)
                  AnnotationTSV
               3. (object)
                  CacheGeonames
               4. (object)
                  CacheOntologies
               5. (object)
                  ConcatenateXsvs
               6. (object)
                  EidosShell
               7. (object)
                  EvalGroundings
               8. (object)
                  EvalOntologyGrounders
               9. (object)
                  EvalTimeNorm
               10. (object)
                   ExampleGenerator
               11. (object)
                   ExtractAndExport
               12. (object)
                   ExtractDocumentFromDirectory
               13. (object)
                   ExtractFromDirectory
               14. (object)
                   ExtractFromFile
               15. (object)
                   ExtractFromText
               16. (object)
                   ExtractJsonLDFromFile
               17. (object)
                   FilterJson
               18. (object)
                   FilterJsonCanonicalNames
               19. (object)
                   FilterJsonExtractions
               20. (object)
                   FilterJsonGeoAndTime
               21. (object)
                   FilterJsonLigatures
               22. (object)
                   FilterJsonPretty
               23. (object)
                   FilterJsonSource
               24. (object)
                   FilterJsonText
               25. (object)
                   GenerateGoldGroundingTSV
               26. (object)
                   GroundCanonicalNames
               27. (object)
                   MakeRuleTSVs
               28. (object)
                   OntologyMapper
               29. (object)
                   ReconstituteAndExport
               30. (object)
                   WMseed
               1. org.clulab.wm.eidos.apps.batch
                  1. (object)
                     ExtractCdrMetaFromDirectory
                  2. (object)
                     ExtractCdrProcOnlyFromDirectory
                  3. (object)
                     ExtractCluFromDirectoryFiltered
                  4. (object)
                     ExtractCluMetaFromDirectory
                  5. (object)
                     ExtractCluMetaFromDirectoryFiltered
                  6. (object)
                     ExtractCluMetaFromDirectoryWithId
                  7. (object)
                     FilterCluDateFromDirectory
                  8. (object)
                     FilterCluKeysFromDirectory
                  9. (object)
                     FilterWithMetaFromDirectory
                  10. (object)
                      FindMissingFiles
                  11. (object)
                      RenameMetaFiles
                  12. (object)
                      SeparateCdrTextFromDirectory
               2. org.clulab.wm.eidos.apps.examples
                  1. (object)
                     ExtractFromText
            3. org.clulab.wm.eidos.attachments
               1. (object)(class)AttachmentHandler
               2. (case class)AttachmentInfo
               3. (object)(class)ContextAttachment
               4. (object)(class)CountAttachment
               5. (object)
                  CountModifier
               6. (object)
                  CountUnit
               7. (object)(class)DCTime
               8. (object)(class)Decrease
               9. (object)(class)EidosAttachment
               10. (object)(class)Hedging
               11. (object)(class)HypothesisHandler
               12. (object)(class)Increase
               13. (object)(class)Location
               14. (case class)MigrationGroupCount
               15. (object)(class)Negation
               16. (object)(class)NegationHandler
               17. (object)(class)NegChange
               18. (object)(class)PosChange
               19. (object)(class)Property
               20. (object)(case class)Provenance
               21. (object)(class)Quantification
               22. (object)(class)Score
               23. (object)(class)Time
               24. (object)(class)TriggeredAttachment
            4. org.clulab.wm.eidos.context
               1. (case class)DCT
               2. (object)(class)GeoNormFinder
               3. (case class)GeoPhraseID
               4. (object)(trait)TimeNormFinder
               5. (class)TimeNormFinderNeural
               6. (class)TimeNormFinderSUTime
               7. (case class)TimeStep
               8. (case class)TimEx
            5. org.clulab.wm.eidos.document
               1. (object)(class)AnnotatedDocument
               2. (object)(class)Metadata
               1. org.clulab.wm.eidos.document.attachments
                  1. (object)(class)DctDocumentAttachment
                  2. (class)DctDocumentAttachmentBuilderFromJson
                  3. (class)DctDocumentAttachmentBuilderFromText
                  4. (object)(class)LocationDocumentAttachment
                  5. (class)LocationDocumentAttachmentBuilderFromJson
                  6. (class)LocationDocumentAttachmentBuilderFromText
                  7. (object)(class)TitleDocumentAttachment
                  8. (class)TitleDocumentAttachmentBuilderFromJson
                  9. (class)TitleDocumentAttachmentBuilderFromText
            6. org.clulab.wm.eidos.expansion
               1. (object)(class)ArgumentExpander
               2. (class)ConceptExpander
               3. (case class)Dependencies
               4. (object)(trait)Expander
               5. (object)
                  ExpansionUtils
               6. (object)(class)MostCompleteEventsKeeper
               7. (class)NestedArgumentExpander
               8. (object)(class)TextBoundExpander
            7. org.clulab.wm.eidos.exporters
               1. (case class)EntityInfo
               2. (object)(trait)Exporter
               3. (case class)GroundingAnnotationExporter
               4. (case class)JSONLDExporter
               5. (case class)MigrationExporter
               6. (class)RegroundExporter
               7. (case class)SerializedExporter
               8. (object)(class)SerializedMentions
            8. org.clulab.wm.eidos.extraction
               1. (object)
                  EntityConstraints
               2. (object)
                  EntityHelper
               3. (object)(trait)Finder
               4. (object)(class)GazetteerEntityFinder
               5. (object)(class)OdinFinder
               6. (object)(class)RuleBasedEntityFinder
            9. org.clulab.wm.eidos.groundings
               1. (trait)AdjectiveGrounder
               2. (case class)AdjectiveGrounding
               3. (object)(class)CompactDomainOntology
               4. (class)CompactNamer
               5. (class)CompactNamerData
               6. (object)(class)CompositionalGrounder
               7. (case class)ConceptEmbedding
               8. (case class)ConceptPatterns
               9. (object)
                  DomainOntologies
               10. (object)(trait)DomainOntology
               11. (object)(class)EidosAdjectiveGrounder
               12. (object)(class)EidosOntologyGrounder
               13. (object)(trait)EidosWordToVec
               14. (class)FakeAdjectiveGrounder
               15. (class)FakeWordToVec
               16. (object)(class)FastDomainOntology
               17. (class)FastNamer
               18. (class)FastNamerData
               19. (class)FlatOntologyGrounder
               20. (class)FullOntologyBranchNode
               21. (class)FullOntologyLeafNode
               22. (class)FullOntologyNode
               23. (class)FullOntologyParentNode
               24. (class)FullOntologyRootNode
               25. (object)(class)FullTreeDomainOntology
               26. (class)HalfOntologyBranchNode
               27. (class)HalfOntologyLeafNode
               28. (class)HalfOntologyNode
               29. (class)HalfOntologyParentNode
               30. (class)HalfOntologyRootNode
               31. (object)(class)HalfTreeDomainOntology
               32. (class)InterventionGrounder
               33. (object)(class)InterventionSieveGrounder
               34. (case class)MockVersion
               35. (object)
                   MockVersions
               36. (object)
                   OntologyAliases
               37. (trait)OntologyGrounder
               38. (case class)OntologyGrounding
               39. (object)(class)OntologyHandler
               40. (class)RealWordToVec
               41. (class)SkipDomainOntology
            10. org.clulab.wm.eidos.mentions
                1. (object)(class)CrossSentenceEventMention
                2. (class)EidosCrossSentenceEventMention
                3. (class)EidosCrossSentenceMention
                4. (class)EidosEventMention
                5. (object)(class)EidosMention
                6. (class)EidosRelationMention
                7. (class)EidosTextBoundMention
                8. (class)HashCodeMapper
                9. (class)IdentityMapper
                10. (class)MentionMapper
            11. org.clulab.wm.eidos.serialization
                1. org.clulab.wm.eidos.serialization.json
                   1. (object)
                      JsonUtils
                   2. (object)
                      WMCrossSentenceEventMention
                   3. (object)
                      WMJSONSerializer
                   1. org.clulab.wm.eidos.serialization.json.json
                      1. (object)
                         CrossSentenceEventMentionOps
                      2. (object)
                         CrossSentenceMentionOps
                      3. (object)
                         EventMentionOps
                      4. (object)
                         MentionOps
                      5. (object)
                         MentionSeq
                      6. (object)
                         OdinPathOps
                      7. (object)
                         RelationMentionOps
                      8. (object)
                         TextBoundMentionOps
                      9. (object)
                         WMCrossSentenceMention
                      10. (object)
                          WMEventMention
                      11. (object)
                          WMRelationMention
                      12. (object)
                          WMTextBoundMention
                2. org.clulab.wm.eidos.serialization.jsonld
                   1. (case class)DocumentSpec
                   2. (case class)Extraction
                   3. (class)IdAndCountAttachment
                   4. (class)IdAndDct
                   5. (class)IdAndDocument
                   6. (class)IdAndGeoPhraseId
                   7. (class)IdAndMention
                   8. (class)IdAndSentence
                   9. (class)IdAndTimex
                   10. (object)(class)IdAndValue
                   11. (class)IdAndWordSpec
                   12. (object)(class)JLDArgument
                   13. (object)(class)JLDAttachment
                   14. (object)(class)JLDConcept
                   15. (object)(class)JLDConceptEntity
                   16. (class)JLDContextAttachment
                   17. (object)(class)JLDCorpus
                   18. (object)(class)JLDCountAttachment
                   19. (object)(class)JLDDCT
                   20. (object)(class)JLDDependency
                   21. (object)(class)JLDDeserializer
                   22. (object)(class)JLDDocument
                   23. (object)(class)JLDExtraction
                   24. (object)(class)JLDGeoID
                   25. (class)JLDGraphMapPair
                   26. (object)(class)JLDInterval
                   27. (object)(class)JLDModifier
                   28. (class)JLDObject
                   29. (object)(class)JLDOntologyGrounding
                   30. (object)(class)JLDOntologyGroundings
                   31. (object)(class)JLDProvenance
                   32. (object)(class)JLDRelation
                   33. (object)(class)JLDRelationCausation
                   34. (object)(class)JLDRelationCoreference
                   35. (object)(class)JLDRelationCorrelation
                   36. (object)(class)JLDRelationMigration
                   37. (object)(class)JLDRelationNegativeAffect
                   38. (object)(class)JLDRelationPositiveAffect
                   39. (class)JLDScoredAttachment
                   40. (object)(class)JLDSentence
                   41. (object)(class)JLDSerializer
                   42. (object)(class)JLDTimeInterval
                   43. (object)(class)JLDTimex
                   44. (object)(class)JLDTrigger
                   45. (class)JLDTriggeredAttachment
                   46. (object)(class)JLDWord
                   47. (case class)SentencesSpec
                   48. (object)(class)TidyJObject
                   49. (case class)WordSpec
            12. org.clulab.wm.eidos.utils
                1. (object)(case class)Alignments
                2. (class)Bagger
                3. (class)Canonicalizer
                4. (class)CliReader
                5. (object)
                   Closer
                6. (object)(case class)ConceptIndicators
                7. (object)(case class)ConceptMatch
                8. (object)(class)Counter
                9. (class)CsvReader
                10. (object)(class)CsvWriter
                11. (object)
                    DisplayUtils
                12. (trait)DocumentFilter
                13. (object)
                    Domain
                14. (object)(class)DomainParams
                15. (class)EidosException
                16. (class)EnglishTagSet
                17. (object)(class)EscapePair
                18. (object)(class)FileEditor
                19. (object)
                    FileUtils
                20. (object)(class)FilterByLength
                21. (object)(class)FilterByNothing
                22. (object)(class)First
                23. (object)(class)FoundBy
                24. (object)
                    GroundingUtils
                25. (class)HashCodeBagger
                26. (class)IdentityBagger
                27. (class)IdeReader
                28. (class)LineReader
                29. (object)
                    MaaSUtils
                30. (object)
                    MentionUtils
                31. (trait)Namer
                32. (object)
                    OdinUtils
                33. (class)PassThruNamer
                34. (object)
                    PlayUtils
                35. (class)PortugueseTagSet
                36. (trait)QuicklyEqualable
                37. (class)Sink
                38. (object)
                    Sinker
                39. (object)
                    Sourcer
                40. (class)SpanishTagSet
                41. (object)(class)StopwordManager
                42. (trait)StopwordManaging
                43. (object)
                    StringUtils
                44. (object)(class)TagSet
                45. (object)
                    ThreadUtils
                46. (object)(class)Timer
                47. (case class)TriggerInfo
                48. (object)(class)TsvReader
                49. (object)(class)TsvWriter
                50. (class)XsvReader
                51. (object)
                    XsvUtils
                52. (class)XsvWriter
                53. (object)
                    YamlUtils
                1. org.clulab.wm.eidos.utils.meta
                   1. (object)(class)CdrText
                   2. (object)(class)CluText
                   3. (trait)EidosText
                   4. (object)
                      JataText
                   5. (object)(class)PlainText
3. utest