List of KB override files to be used.
List of entity labeling files for the rule-based NER.
List of entity labeling files for the rule-based NER. If missing, an error is thrown. NB: file order is important: it indicates priority!
Engine to automatically produce lexical variations of entity names
Generates all accepted lexical variations for this entity For example: "insulin receptor substrate 1" => "insulin receptor substrate-1"
Generates all accepted lexical variations for this entity For example: "insulin receptor substrate 1" => "insulin receptor substrate-1"
The original form of the entity
All accepted lexical variations, including the original form
Loads all KBs; KBs must be listed in descending order of their priorities
Finds special tokens such as family names containing slash These tokens are maintained as case insensitive
Loads the KBs from bioresources under org/clulab/reach/kb/ner These must be generated offline by KBGenerator; see bioresources/ner_kb.sh User: mihais. 2/7/16. Last Modified: Update to use external configuration file.