Object/Class

org.clulab.processors.bionlp.ner

KBLoader

Related Docs: class KBLoader | package ner

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object KBLoader

Loads the KBs from bioresources under org/clulab/reach/kb/ner These must be generated offline by KBGenerator; see bioresources/ner_kb.sh User: mihais. 2/7/16. Last Modified: Update to use external configuration file.

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val ENTITY_STOPLIST: Set[String]

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  5. val LABEL_FIELD_NDX: Int

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  6. val NAME_FIELD_NDX: Int

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  7. val NER_OVERRIDE_KBS: List[String]

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    List of KB override files to be used.

  8. val RULE_NER_KBS: List[String]

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    List of entity labeling files for the rule-based NER.

    List of entity labeling files for the rule-based NER. If missing, an error is thrown. NB: file order is important: it indicates priority!

  9. val UNSLASHABLE_TOKENS_KBS: List[String]

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  10. final def asInstanceOf[T0]: T0

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  11. def clone(): AnyRef

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  12. val config: Config

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  13. final def eq(arg0: AnyRef): Boolean

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  14. def equals(arg0: Any): Boolean

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  15. def finalize(): Unit

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  16. final def getClass(): Class[_]

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  17. def hashCode(): Int

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  18. final def isInstanceOf[T0]: Boolean

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  19. val lexicalVariationEngine: Some[LexicalVariations]

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    Engine to automatically produce lexical variations of entity names

  20. def lexicalVariations(tokens: Array[String]): Seq[Array[String]]

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    Generates all accepted lexical variations for this entity For example: "insulin receptor substrate 1" => "insulin receptor substrate-1"

    Generates all accepted lexical variations for this entity For example: "insulin receptor substrate 1" => "insulin receptor substrate-1"

    tokens

    The original form of the entity

    returns

    All accepted lexical variations, including the original form

  21. def load(kbs: List[String], overrideKBs: Option[List[String]], useLemmas: Boolean = false, caseInsensitive: Boolean = true): RuleNER

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    Loads all KBs; KBs must be listed in descending order of their priorities

  22. def loadAll: RuleNER

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  23. def loadEntityStopList(kb: String): Set[String]

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  24. final def ne(arg0: AnyRef): Boolean

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  25. final def notify(): Unit

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  26. final def notifyAll(): Unit

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  27. var ruleNerSingleton: Option[RuleNER]

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  28. final def synchronized[T0](arg0: ⇒ T0): T0

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  29. def toString(): String

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  30. final def wait(): Unit

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  31. final def wait(arg0: Long, arg1: Int): Unit

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  32. final def wait(arg0: Long): Unit

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