FastBioNLPProcessor

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. def annotate(doc: Document): Document

   

   Definition Classes

   Processor

5. def annotate(text: String, keepText: Boolean): Document

   

   Definition Classes

   Processor → ProcessorAnnotator

6. def annotateFromSentences(sentences: Iterable[String], keepText: Boolean): Document

   

   Definition Classes

   Processor → ProcessorAnnotator

7. def annotateFromTokens(sentences: Iterable[Iterable[String]], keepText: Boolean): Document

   

   Definition Classes

   Processor → ProcessorAnnotator

8. def arrayOrNone[T](b: ArrayBuffer[T])(implicit arg0: ClassTag[T]): Option[Array[T]]

   

   Definition Classes

   ShallowNLPProcessor

9. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

10. def basicSanityCheck(doc: Document, checkAnnotation: Boolean = true): Option[Annotation]

    

    Definition Classes

    ShallowNLPProcessor

11. lazy val chunker: CRFChunker

    

    Definition Classes

    ShallowNLPProcessor

12. def chunking(doc: Document): Unit

    

    Definition Classes

    ShallowNLPProcessor → Processor

13. def clone(): AnyRef

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

14. def discourse(doc: Document): Unit

    

    Definition Classes

    FastNLPProcessor → ShallowNLPProcessor → Processor

15. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

16. def equals(arg0: Any): Boolean

    

    Definition Classes

    AnyRef → Any

17. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

18. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

19. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

20. def in(s: String): String

    

    Definition Classes

    ShallowNLPProcessor

21. val internStrings: Boolean

    

    Definition Classes

    ShallowNLPProcessor

22. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

23. def lemmatize(doc: Document): Unit

    

    Definition Classes

    ShallowNLPProcessor → Processor

24. lazy val lemmatizer: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

25. def mkChunker: CRFChunker

    

    Definition Classes

    ShallowNLPProcessor

26. def mkDocument(text: String, keepText: Boolean): Document

    

    Definition Classes

    ShallowNLPProcessor → Processor

27. def mkDocumentFromSentences(sentences: Iterable[String], keepText: Boolean, charactersBetweenSentences: Int = 1): Document

    

    Definition Classes

    ShallowNLPProcessor → Processor

28. def mkDocumentFromTokens(sentences: Iterable[Iterable[String]], keepText: Boolean, charactersBetweenSentences: Int = 1, charactersBetweenTokens: Int = 1): Document

    

    Definition Classes

    ShallowNLPProcessor → Processor

29. def mkLemmatizer: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

30. def mkNer: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

31. def mkPosTagger: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

32. def mkSentence(annotation: CoreMap): Sentence

    

    Definition Classes

    ShallowNLPProcessor

33. def mkTokenizerWithSentenceSplitting: StanfordCoreNLP

    

    Definition Classes

    FastBioNLPProcessor → ShallowNLPProcessor

34. def mkTokenizerWithoutSentenceSplitting: StanfordCoreNLP

    

    Definition Classes

    FastBioNLPProcessor → ShallowNLPProcessor

35. def namedEntitySanityCheck(doc: Document): Option[Annotation]

    

    Definition Classes

    ShallowNLPProcessor

36. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

37. lazy val ner: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

38. final def notify(): Unit

    

    Definition Classes

    AnyRef

39. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

40. def parse(doc: Document): Unit

    

    Definition Classes

    FastNLPProcessor → ShallowNLPProcessor → Processor

41. lazy val posTagger: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

42. def postprocessTags(annotation: Annotation): Unit

    

    Improve POS tagging in the Bio domain

    Improve POS tagging in the Bio domain

    annotation

    The CoreNLP annotation

    Definition Classes

    FastBioNLPProcessor → ShallowNLPProcessor

43. def postprocessTokens(originalTokens: Array[CoreLabel]): Array[CoreLabel]

    

    Hook to allow postprocessing of CoreNLP tokenization This is useful for domain-specific corrections, such as the ones in BioNLPProcessor If you change the tokens, make sure to store them back in the sentence!

    Hook to allow postprocessing of CoreNLP tokenization This is useful for domain-specific corrections, such as the ones in BioNLPProcessor If you change the tokens, make sure to store them back in the sentence!

    originalTokens

    Input CoreNLP sentence

    returns

    The modified tokens

    Definition Classes

    FastBioNLPProcessor → ShallowNLPProcessor

44. def postprocessTokens(sentence: CoreMap): List[CoreLabel]

    

    Attributes

    protected

    Definition Classes

    ShallowNLPProcessor

45. def preprocessSentences(origSentences: Iterable[String]): Iterable[String]

    

    Definition Classes

    ProcessorAnnotator

46. def preprocessText(origText: String): String

    

    Definition Classes

    FastBioNLPProcessor → ProcessorAnnotator

47. def preprocessTokens(origSentences: Iterable[Iterable[String]]): Iterable[Iterable[String]]

    

    Definition Classes

    ProcessorAnnotator

48. def recognizeNamedEntities(doc: Document): Unit

    

    Definition Classes

    FastBioNLPProcessor → ShallowNLPProcessor → Processor

49. def resolveCoreference(doc: Document): Unit

    

    Definition Classes

    FastBioNLPProcessor → ShallowNLPProcessor → Processor

50. lazy val rstDependencyParser: RSTParser

    

    RST discourse parser using only dependency based syntax

    RST discourse parser using only dependency based syntax

    Definition Classes

    FastNLPProcessor

51. def shutdownClient: Unit

    

    Definition Classes

    ProcessorCSController

52. def shutdownClientServer: Unit

    

    Definition Classes

    ProcessorCSController

53. def shutdownServer: Unit

    

    Definition Classes

    ProcessorCSController

54. lazy val stanfordDepParser: DependencyParser

    

    Stanford's NN dependency parser

    Stanford's NN dependency parser

    Definition Classes

    FastNLPProcessor

55. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

56. def tagPartsOfSpeech(doc: Document): Unit

    

    Definition Classes

    ShallowNLPProcessor → Processor

57. def toString(): String

    

    Definition Classes

    AnyRef → Any

58. lazy val tokenizerWithSentenceSplitting: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

59. lazy val tokenizerWithoutSentenceSplitting: StanfordCoreNLP

    

    Definition Classes

    ShallowNLPProcessor

60. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

61. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

62. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

63. val withChunks: Boolean

    

    Definition Classes

    ShallowNLPProcessor