Object/Class

org.clulab.processors.bionlp.ner

KBLoader

Related Docs: class KBLoader | package ner

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object KBLoader

Loads the KBs from bioresources under org/clulab/reach/kb/ner These must be generated offline by KBGenerator; see bioresources/ner_kb.sh User: mihais. 2/7/16. Last Modified: Update to use external configuration file.

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val NER_OVERRIDE_KBS: List[String]

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    List of KB override files to be used.

  5. val RULE_NER_KBS: List[String]

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    List of entity labeling files for the rule-based NER.

    List of entity labeling files for the rule-based NER. If missing, an error is thrown. NB: file order is important: it indicates priority!

  6. val UNSLASHABLE_TOKENS_KBS: List[String]

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  7. final def asInstanceOf[T0]: T0

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  8. def clone(): AnyRef

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  9. val config: Config

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  10. final def eq(arg0: AnyRef): Boolean

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  11. def equals(arg0: Any): Boolean

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  12. def finalize(): Unit

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  13. final def getClass(): Class[_]

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  14. def hashCode(): Int

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  15. final def isInstanceOf[T0]: Boolean

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  16. def loadAll(fromSerializedModel: Boolean = false): LexiconNER

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  17. def main(args: Array[String]): Unit

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    Creates the serialized LexiconNER model from the provided KBs This is called in bioresources/ner_kb.sh

    Creates the serialized LexiconNER model from the provided KBs This is called in bioresources/ner_kb.sh

    args

    The file in which to save the serialized model

  18. final def ne(arg0: AnyRef): Boolean

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  19. final def notify(): Unit

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  20. final def notifyAll(): Unit

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  21. var ruleNerSingleton: Option[LexiconNER]

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  22. val serNerModel: Option[String]

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  23. val stopListFile: Option[String]

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    A horrible hack to keep track of entities that should not be labeled when in lower case, or upper initial case.

  24. final def synchronized[T0](arg0: ⇒ T0): T0

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  25. def toString(): String

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  26. final def wait(): Unit

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  27. final def wait(arg0: Long, arg1: Int): Unit

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  28. final def wait(arg0: Long): Unit

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