Package

org.clulab.processors.bionlp

ner

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package ner

Visibility
  1. Public
  2. All

Type Members

  1. class BioNERFactory[IN <: CoreLabel] extends NERFeatureFactory[IN]

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  2. class CRFNER extends AnyRef

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    Our own BIO NER trained on the BioCreative 2 dataset, using the Stanford CRF User: mihais Date: 2/27/15 Last Modified: Update for Scala 2.12: java converters.

  3. class HybridNER extends AnyRef

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    Combines RuleNER and CRFNER into a, surprise surprise, hybrid NER User: mihais Date: 2/9/17 Last Modified: Update for Scala 2.12: java converters.

  4. case class KBEntry(kbName: String, neLabel: String, validSpecies: Set[String]) extends Product with Serializable

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  5. class KBLoader extends AnyRef

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Value Members

  1. object CRFNER

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  2. object CleanParenPOSTags

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    Makes sure that POS tags for parens follow the Treebank conventions (they do

  3. object HybridNER

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  4. object KBGenerator

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    This is used in bioresources to format the data into a format that is easy to load at runtime User: mihais Date: 2/7/16 Last Modified: Fix compiler issue: import scala.io.Source.

  5. object KBLoader

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    Loads the KBs from bioresources under org/clulab/reach/kb/ner These must be generated offline by KBGenerator; see bioresources/ner_kb.sh User: mihais.

    Loads the KBs from bioresources under org/clulab/reach/kb/ner These must be generated offline by KBGenerator; see bioresources/ner_kb.sh User: mihais. 2/7/16. Last Modified: Update to use external configuration file.

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