Object

org.clulab.reach.export.apis

Api

Related Doc: package apis

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object Api

External interface class to accept and process text strings and NXML documents, returning Reach results as a sequence of BioMentions. Author: Tom Hicks. 10/19/2015. Last Modified: Import all of ai.lum.nxmlreader.

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Type Members

  1. type JReachResults = List[BioMention]

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  2. type ReachResults = Seq[BioMention]

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. val config: Config

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  7. val encoding: String

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  8. final def eq(arg0: AnyRef): Boolean

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  9. def equals(arg0: Any): Boolean

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  10. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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  12. def hashCode(): Int

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  13. val ignoreSections: List[String]

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  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. val reach: ReachSystem

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  19. val reader: NxmlReader

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  20. def runOnFriesEntry(entry: FriesEntry): ReachResults

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    Annotates a single FriesEntry and returns Reach results.

  21. def runOnNxml(nxml: String): ReachResults

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    Extracts raw text from given nxml string and returns Reach results.

  22. def runOnNxmlToJava(nxml: String): JReachResults

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    Extracts raw text from given nxml string and returns Java Reach results.

  23. def runOnText(text: String, docId: String = Prefix, chunkId: String = Suffix): ReachResults

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    Annotates text by converting it to a FriesEntry and calling runOnFriesEntry().

  24. def runOnTextToJava(text: String, docId: String, chunkId: String): JReachResults

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    Annotates text by converting it to a FriesEntry and calling runOnFriesEntryToJava().

  25. def runOnTextToJava(text: String, docId: String): JReachResults

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    Annotates text by converting it to a FriesEntry and calling runOnFriesEntryToJava().

  26. def runOnTextToJava(text: String): JReachResults

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    Annotates text by converting it to a FriesEntry and calling runOnFriesEntryToJava().

    Annotates text by converting it to a FriesEntry and calling runOnFriesEntryToJava(). Uses fake document ID and chunk ID.

  27. final def synchronized[T0](arg0: ⇒ T0): T0

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  28. def toString(): String

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  29. final def wait(): Unit

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  30. final def wait(arg0: Long, arg1: Int): Unit

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  31. final def wait(arg0: Long): Unit

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