Package

org.clulab.reach

mentions

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package mentions

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Type Members

  1. trait Anaphoric extends AnyRef

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  2. class BioEventMention extends EventMention with Modifications with Grounding with Display with Context

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  3. type BioMention = Mention with Modifications with Grounding with Display with Context

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  4. class BioRelationMention extends RelationMention with Modifications with Grounding with Display with Context

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  5. class BioTextBoundMention extends TextBoundMention with Modifications with Grounding with Display with Context

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  6. case class CHEMtrigger(evidence: Mention) extends Modification with Product with Serializable

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  7. class CorefEventMention extends BioEventMention with Anaphoric

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  8. type CorefMention = BioMention with Anaphoric

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  9. class CorefRelationMention extends BioRelationMention with Anaphoric

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  10. class CorefTextBoundMention extends BioTextBoundMention with Anaphoric

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  11. case class DNtrigger(evidence: Mention) extends Modification with Product with Serializable

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  12. trait Display extends AnyRef

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  13. case class EventSite(site: Mention) extends Modification with Product with Serializable

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  14. trait Grounding extends AnyRef

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    Trait which holds grounding information for a mention.

    Trait which holds grounding information for a mention. Written by: Marco Valenzuela, Tom Hicks. Last Modified: Propagate ambiguity: comment out finalization methods.

  15. case class Hypothesis(evidence: Mention) extends Modification with Product with Serializable

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  16. case class KDtrigger(evidence: Mention) extends Modification with Product with Serializable

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  17. case class KOtrigger(evidence: Mention) extends Modification with Product with Serializable

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  18. type Link = (Seq[CorefMention], AntecedentSelector) ⇒ Seq[CorefMention]

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  19. implicit class MentionOps extends AnyRef

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  20. sealed trait Modification extends AnyRef

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  21. trait Modifications extends AnyRef

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  22. case class Mutant(evidence: Mention, foundBy: String) extends Modification with Product with Serializable

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  23. case class Negation(evidence: Mention) extends Modification with Product with Serializable

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  24. case class OEtrigger(evidence: Mention) extends Modification with Product with Serializable

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  25. case class PTM(label: String, evidence: Option[Mention] = None, site: Option[Mention] = None, negated: Boolean = false) extends Modification with Product with Serializable

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  26. case class UnassignedTrigger(evidence: Mention) extends Modification with Product with Serializable

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Value Members

  1. object BioMention

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  2. object CorefMention

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  3. package serialization

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